Locus 6931

Sequence ID 2L_DroMel_CAF1
Location 19,294,301 – 19,294,401
Length 100
Max. P 0.907635
window11047

overview

Window 7

Location 19,294,301 – 19,294,401
Length 100
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 70.37
Mean single sequence MFE -22.43
Consensus MFE -8.58
Energy contribution -9.33
Covariance contribution 0.75
Combinations/Pair 1.29
Mean z-score -2.11
Structure conservation index 0.38
SVM decision value 1.05
SVM RNA-class probability 0.907635
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19294301 100 - 22407834
AAAGCACGAGGAAGCCAGAGAUAAGUCGCUGUGCUAAUUGGAUAUCAAAAUUCAAAGAGUUCAUAGGGAAGACUAGGCACACCUCACAGCUAUUACAACU-------
..(((..((((..(((..((.....((.(((((((..((((((......))))))..))..))))).))...)).)))...))))...))).........------- ( -23.00)
>DroSec_CAF1 35376 100 - 1
AAAGCACGAGGAAGCCAGAGAUAAAUCGCUGUGCUAAUUGGAUAUGAAAAUUCAAAGUCUUCAUAAGGAAGACUAGGCACACCUCACAACCAUUACAACU-------
.......((((.(((..((......)))))(((((..((((((......))))))(((((((.....))))))).))))).))))...............------- ( -26.50)
>DroSim_CAF1 42210 100 - 1
AAAGCACGAGGAAGCCAGAGACAAGUCGCUGUGCUAAUUGGAUAUGAAAAUUCAAAGUCUUCAUAAGGAAGACUAGGCACACCUCACAACCAUUACAACU-------
.......((((.....((.((....)).))(((((..((((((......))))))(((((((.....))))))).))))).))))...............------- ( -26.20)
>DroEre_CAF1 41084 87 - 1
GAAGCAAGAGGAAGCCAGAGAUAAAACUCUGUGCUAAUUGGAUGCGAAAAUUGCGAGU-----------AGUUUAGGCACACCUUAA-ACUAUUAA-ACU-------
...((((.....((((((((......))))).)))..(((....)))...)))).(((-----------((((((((.....)))))-))))))..-...------- ( -22.40)
>DroYak_CAF1 41331 100 - 1
GAAGCACGAGGAUGCCAGGGAUAAAACUCUGUGCUAAUUGGAUAUAAAAAUUGAUAGUGUUCGUAGGAUGGCUUAGGCACACCUUAAAACUAUUAAAACU-------
..((((((((..(.(....)...)..))).)))))...............((((((((......(((.((((....)).)))))....))))))))....------- ( -21.80)
>DroAna_CAF1 62423 90 - 1
CAAGCUCGAAGAAGCUAGAGACAAGACCCUCUGCUAAUAG-----CAAAAUUUUAAGUAUUUGGAAGC----------AAAGUUCAA-AUUGUAGA-AUUCAUAUUU
...(((......(((.((((........)))))))...))-----)..(((((((...(((((((...----------....)))))-))..))))-)))....... ( -14.70)
>consensus
AAAGCACGAGGAAGCCAGAGAUAAAACGCUGUGCUAAUUGGAUAUGAAAAUUCAAAGUCUUCAUAAGGAAGACUAGGCACACCUCAAAACUAUUAAAACU_______
.......((((.((((((.(......).))).)))..((((((......))))))..........................))))...................... ( -8.58 =  -9.33 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:10 2006