| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,293,947 – 19,294,054 |
| Length | 107 |
| Max. P | 0.599139 |
| Location | 19,293,947 – 19,294,054 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.32 |
| Mean single sequence MFE | -34.36 |
| Consensus MFE | -21.39 |
| Energy contribution | -23.14 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19293947 107 - 22407834 UCGCGUCCUGCUCUGCAGUCAUCAUAAGUCACCGAAUUGUCGGGCACUCAAGACAAAUGUGACACUUGCUUAUUUAAUUAGAGAUCUGCAGG-------CGGGAUGG-----AAGGCCA- ((.((((((((.((((((((.((....(((((....(((((..........)))))..))))).......((......)))))).)))))))-------))))))))-----)......- ( -35.60) >DroPse_CAF1 17014 110 - 1 UCG---CCCGCUCUGCAGUCAUCAUAAGUCACCGAAUCGUCGGACACUCAAGACAAAUGUGACGCUGGCUUAUUUAAUUAGAAAGCUGCAGA-------CAGGGCCAAGUCCGAGAUCAG ..(---(((..((((((((..((((((((((((((....)))).(((...........)))....)))))))).......))..))))))))-------..))))............... ( -33.81) >DroSec_CAF1 34991 107 - 1 UCGCGUCCUGCUCUGCAGUCAUCAUAAGUCACCGAAUUGUCGGGCACUCAAGACAAAUGUGACACUGGCUUAUUUAAUUAGAGAUCUGCAGG-------CGGAAUGG-----AAGGCCA- ((.(((.((((.((((((((.((((((((((((((....)))).(((...........)))....)))))))).......)))).)))))))-------))).))))-----)......- ( -31.11) >DroEre_CAF1 40743 105 - 1 --GCGUCCUGCUCUGCAGUCAUCAUAAGUCACCGAAUUGUCGGGCACUCAAGACAAAUGUGACACUGGCUUAUUUAAUUAGAGAUCUGCAGG-------CGGGAUGG-----AAGGCCA- --.((((((((.((((((((.((((((((((((((....)))).(((...........)))....)))))))).......)))).)))))))-------))))))).-----.......- ( -37.21) >DroAna_CAF1 62033 114 - 1 UCGCGUCUUGCUCUGCAGUCGUCAUAAGUCACCAAAUUGUCGGACACUCAAGACAAAUGUGAUGCUGGCUUAUUUAAUUAGAAAGCUGCAGAGAGACAGAGCGGCGA-----AAAAGCA- .(((((((..(((((((((..((((((((((.((..(((((..........)))))...))....)))))))).......))..)))))))))))))...)))((..-----....)).- ( -34.61) >DroPer_CAF1 17409 110 - 1 UCG---CCCGCUCUGCAGUCAUCAUAAGUCACCGAAUCGUCGGACACUCAAAACAAAUGUGACGCUGGCUUAUUUAAUUAGAAAGCUGCAGA-------CAGGGCCAAGUCCGAGAUCAG ..(---(((..((((((((..((((((((((((((....)))).(((...........)))....)))))))).......))..))))))))-------..))))............... ( -33.81) >consensus UCGCGUCCUGCUCUGCAGUCAUCAUAAGUCACCGAAUUGUCGGACACUCAAGACAAAUGUGACACUGGCUUAUUUAAUUAGAAAGCUGCAGA_______CGGGACGA_____AAGACCA_ ...(((((((.(((((((...((((((((((((((....)))).(((...........)))....)))))))).......))...))))))).......))))))).............. (-21.39 = -23.14 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:09 2006