Locus 693

Sequence ID 2L_DroMel_CAF1
Location 2,011,924 – 2,012,024
Length 100
Max. P 0.500000
window1135

overview

Window 5

Location 2,011,924 – 2,012,024
Length 100
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 84.18
Mean single sequence MFE -21.23
Consensus MFE -15.49
Energy contribution -15.71
Covariance contribution 0.22
Combinations/Pair 1.12
Mean z-score -1.70
Structure conservation index 0.73
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2011924 100 + 22407834
UCGCGUUCAGUUC-UUGCUCAUAUU---UCAC---CC-------CACUUUCCUUCCUUUCCACGCAAAAGUUGUCACAACAUUCCGUGACAAUGAGGGCAACAAAGCCAGGAA--A
..(((........-.))).......---....---..-------....(((((..((((....((....((((((((........))))))))....))...))))..)))))--. ( -20.60)
>DroSec_CAF1 29477 100 + 1
UCGCGUUCAGUUC-UUGCUCAUAUU---UCAC---CC-------CACUUUCCCUGCUUUCCACGCAAAAGUUGUCACAACAUUCCGUGACAACGAGGGCAACAAAGCCACGAA--A
...(((....((.-((((((.....---....---..-------.........(((.......)))...((((((((........))))))))..)))))).))....)))..--. ( -23.10)
>DroSim_CAF1 27783 100 + 1
UCGCGUUCAGUUC-UUGCUCAUAUU---UCAC---CC-------CACUUUCCCUGCUUUCCACGCAAAAGUUGUCACAACAUUCCGUGACAACGAGGGCAACAAAGCCACGAA--A
...(((....((.-((((((.....---....---..-------.........(((.......)))...((((((((........))))))))..)))))).))....)))..--. ( -23.10)
>DroEre_CAF1 26618 100 + 1
UCGCGUUCAGUUU-UUGCUCAUAUU---UCAU---UC-------CACUUUCCAUCCUUUCCACGCAAAAGUUGUCACAACAUUCCGUGACAACGAGGGCAACAAAGCCACGAA--A
..((.(((...((-((((.......---....---..-------...................))))))((((((((........))))))))))).))..............--. ( -21.05)
>DroYak_CAF1 30940 99 + 1
UCGCGUUCGGUU--UUGCUCAUAUU---UCAC---CC-------CACUUUCCUUCCUUUCCACGCAAAAGUUGUCACAACAUUCCGUGACAACGAGGGCAACAAAGCCACGAA--A
.....((((.((--((((.......---....---..-------...................))))))((((((((........))))))))...(((......))).))))--. ( -21.75)
>DroAna_CAF1 26798 116 + 1
UCGCGUUUAGUUUUUUGCUCCAAUUCUUUCGUUAUUCUUAUUUAUUUUUUUGUUCCUGUCCACGCAAAAGUUGUCAAAACAUUUCGUGACACCGAGGACAAUACGGCUGUAAGGCA
..((....(((.....))).................(((((........(((((((((((.(((.(((.(((.....))).))))))))))..).)))))).......))))))). ( -17.76)
>consensus
UCGCGUUCAGUUC_UUGCUCAUAUU___UCAC___CC_______CACUUUCCUUCCUUUCCACGCAAAAGUUGUCACAACAUUCCGUGACAACGAGGGCAACAAAGCCACGAA__A
..((.(((......((((.............................................))))..((((((((........))))))))))).))................. (-15.49 = -15.71 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:05 2006