Locus 6929

Sequence ID 2L_DroMel_CAF1
Location 19,293,717 – 19,293,813
Length 96
Max. P 0.688296
window11045

overview

Window 5

Location 19,293,717 – 19,293,813
Length 96
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.89
Mean single sequence MFE -20.57
Consensus MFE -11.37
Energy contribution -12.65
Covariance contribution 1.28
Combinations/Pair 1.17
Mean z-score -2.22
Structure conservation index 0.55
SVM decision value 0.32
SVM RNA-class probability 0.688296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19293717 96 - 22407834
GGUCUAAAAAAAAAAACCCGCUCUC--UGGUCAAUUGAAAAUUUUCUUGCUAUUUUUCAGCAGGGAAAAACUUUUUUAAUUACCACCGAAA-------AGAGACG
..................((.((((--((((.(((((((((((((((((((.......))))))))))....)))))))))))).......-------))))))) ( -20.61)
>DroSec_CAF1 34766 91 - 1
GGUCUAAA-----AAACCGGCUCGC--UGGUCAAUUGAAAAUUUUCUUGCUAUUUUUCAGCAGGGAAAAACUUUUUUAAUUACCACCGAAA-------AGAGACG
.((((...-----....(((.....--((((.(((((((((((((((((((.......))))))))))....))))))))))))))))...-------..)))). ( -24.00)
>DroSim_CAF1 41600 91 - 1
GGUCUAAA-----AAACCGGCUCUC--UGGUCAAUUGAAAAUUUUCUUGCUAUUUUUCAGCAGGGAAAAACUUUUUUAAUUACCACCGAAA-------AGAGACG
.((((...-----....(((.....--((((.(((((((((((((((((((.......))))))))))....))))))))))))))))...-------..)))). ( -24.00)
>DroEre_CAF1 40511 97 - 1
GGUCUAAA-----A-AGUCGCUCUC--UGGUCGAUUGAAAAUUUUCUUGCUAUUUUUCAGCUGUGAAAAACUUUUUUAAUUACCACCGUGACGGUGACGGUGACG
........-----.-.((((((.((--.(((.((((((((((((((..(((.......)))...)))))...))))))))))))((((...)))))).)))))). ( -25.10)
>DroYak_CAF1 40785 90 - 1
GGUCUAAA-----AAACUCCCUAUC--UGGUCAAUUGAAAAUUUUCUUGCUAUUUCU-AGCAGUGAAAAACUUUUUUAAUUACCACCGAAA-------AGAGACG
.((((...-----............--((((.((((((((((((((((((((....)-))))).)))))...))))))))))))).(....-------.))))). ( -18.90)
>DroAna_CAF1 61805 89 - 1
ACUAAAAA-----A-AACAAUUCUCCACUGUCAAUUGGAAUUUUUCUU-CUAUUUUUCGAUU-GCAGAAACUUUUUUAAUUACC-CCGCAA-------CGAGACA
........-----.-......((((..(((.(((((((((........-.....))))))))-))))(((....))).......-......-------.)))).. ( -10.82)
>consensus
GGUCUAAA_____AAACCCGCUCUC__UGGUCAAUUGAAAAUUUUCUUGCUAUUUUUCAGCAGGGAAAAACUUUUUUAAUUACCACCGAAA_______AGAGACG
...........................((((.(((((((((((((((((((.......))))))))))....))))))))))))).................... (-11.37 = -12.65 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:08 2006