Locus 6927

Sequence ID 2L_DroMel_CAF1
Location 19,291,420 – 19,291,526
Length 106
Max. P 0.699633
window11041

overview

Window 1

Location 19,291,420 – 19,291,526
Length 106
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -30.16
Consensus MFE -26.83
Energy contribution -26.59
Covariance contribution -0.24
Combinations/Pair 1.10
Mean z-score -1.34
Structure conservation index 0.89
SVM decision value 0.35
SVM RNA-class probability 0.699633
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19291420 106 - 22407834
---GUCGAUGUCGAUGACGUUGCCUCGGGCCAGUUUGUGGCACCGGCCAUGCAAAUGCAAAUGGGCAAAUGUAAAAUGCAAACUGAAAACUGCAAAAUG--------CAAAAUGCAC
---((((....)))).((((((((((((((((.....)))).)))....(((....)))...)))).)))))....((((..........))))...((--------(.....))). ( -28.20)
>DroSec_CAF1 32526 106 - 1
---GUCGAUGUCGAUGACGUCGCCUCGGGCCAGUUUGUGGCACCGGCCAUGCAAAUGCAAAUGGGCAAAUGUAAAAUGCAAACUGAAAACUGCAAAAUG--------CAAAAUGCAC
---(.(((((((...))))))).)....(((((((((((((....))).((((..(((......)))..))))....)))))))).....(((.....)--------))....)).. ( -29.80)
>DroSim_CAF1 39349 113 - 1
---GUCGAUGUCGAUGACGUCGCCUCGGGCCAGCUUGUGGCACCGGCCAUGCAAAUGCAAAUGGGCAAAUGUAAAAUGCAAACUGAAAACUGCAAAAUGCAAAAUG-CAAAAUGCAC
---(.(((((((...))))))).).(((((((.....)))).)))(((.(((....)))....)))...((((...((((..........))))...))))...((-(.....))). ( -30.90)
>DroEre_CAF1 38400 102 - 1
GAUGUCGAUGUUGGUGACGUCGCCUCGGGCCAGUUUGUGGCACCGGCCAUGCAAAUGCAAAUGGGCAAAUGUAAAAUGCAAGCUGAAAACUGCAAAA---------------UGCAC
(((((((.......)))))))(((...)))(((((((((((....))).((((..(((......)))..))))....)))))))).....(((....---------------.))). ( -30.30)
>DroYak_CAF1 38472 117 - 1
GAUGUCGAUGUCGAUGACGUCGCCUCGGGCCAGUUUGUGGCACCGGCCAUGCAAAUGCAAAUGGGCAAAUGUAAAAUGCAAACUGAAAACUGCAAAAUGCAAAAUGGGAAAAUGCAC
((.(.(((((((...)))))))).))..(((((((((((((....))).((((..(((......)))..))))....)))))))).....(((.....)))............)).. ( -31.60)
>consensus
___GUCGAUGUCGAUGACGUCGCCUCGGGCCAGUUUGUGGCACCGGCCAUGCAAAUGCAAAUGGGCAAAUGUAAAAUGCAAACUGAAAACUGCAAAAUG________CAAAAUGCAC
......((((((...))))))(((...)))(((((((((((....))).((((..(((......)))..))))....)))))))).....((((..................)))). (-26.83 = -26.59 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:04 2006