| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,287,250 – 19,287,344 |
| Length | 94 |
| Max. P | 0.715778 |
| Location | 19,287,250 – 19,287,344 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -33.53 |
| Consensus MFE | -19.15 |
| Energy contribution | -20.48 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19287250 94 + 22407834 -----CGUAGUCCAUGCAAAC-----GAACCAACUGUGAG-----CAGAGCCGCCAUUGGGGACCAGUGGCGUGGUUUGGAAAAGUCUGAAGCGUGGAAAGUCCUCUUA----- -----.....(((((((...(-----((((((.(((....-----)))...(((((((((...))))))))))))))))((....))....)))))))...........----- ( -35.20) >DroSec_CAF1 28373 99 + 1 -----UGUAGUCCAUGCAAACCAACUGAACCAACUGUGAG-----CAGAGCCGCCAUUGGGGACCAGUGGCGUGGUUUGGAAAAGUCUGAAGCGUGGAAAGUCCUCUUG----- -----.....(((((((..((...(..(((((.(((....-----)))...(((((((((...))))))))))))))..)....)).....)))))))...........----- ( -33.70) >DroSim_CAF1 35189 99 + 1 -----CGUAGUCCAUGCAAACCAACUGAACCAACUGUGAG-----CAGAGCCGCCAUUGGGGACCAGUGGCGUGGUUUGGAAAAGUCUGAAGCGUGGAAAGUCCUCUCA----- -----.....(((((((..((...(..(((((.(((....-----)))...(((((((((...))))))))))))))..)....)).....)))))))...........----- ( -33.70) >DroEre_CAF1 34303 94 + 1 -----CGUAGUCCAUGCAAAC-----GAACCAGCUGGGAG-----CAGAGGCGCCAUUGCUCUCCAGUGACGGGGUUUGAAAAACCCCGAAGUGGGGAAAGUCCUCCUA----- -----.(((.....)))....-----......((((((((-----(((.(....).)))))).)))))..(((((((.....))))))).((.((((.....)))))).----- ( -35.00) >DroYak_CAF1 34313 94 + 1 -----CGUAGUCCAUGCAAAC-----GAACCAACUGUGAG-----CAGAGGCGCCAUUGGGCGCCAGUGGCGGGGUUUGAAAAGCACUGAAGUGUGGAAAGUCCUCUUA----- -----.....(((.......(-----(((((..(((....-----)))...(((((((((...))))))))).))))))....((((....)))))))...........----- ( -31.30) >DroAna_CAF1 53239 102 + 1 UGCUUCGUAGUCCAUGCAAAC-----GAUCCAACUGUGAACUGCACAGAGGAGACAUUGAUGGCCAGUGGCGUGGUUA-----CUUCGGAAG--AGGAGGGUCUUCCUAACAGA ......((((.((((((....-----..(((..(((((.....))))).)))..(((((.....))))))))))))))-----)...(((((--(......))))))....... ( -32.30) >consensus _____CGUAGUCCAUGCAAAC_____GAACCAACUGUGAG_____CAGAGCCGCCAUUGGGGACCAGUGGCGUGGUUUGGAAAAGUCUGAAGCGUGGAAAGUCCUCUUA_____ ..........(((((((.........(((((..(((.........)))...((((((((.....)))))))).))))).............)))))))................ (-19.15 = -20.48 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:03 2006