| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,287,120 – 19,287,222 |
| Length | 102 |
| Max. P | 0.925646 |
| Location | 19,287,120 – 19,287,222 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.90 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.43 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19287120 102 - 22407834 CA------------------CGUCCACGUCCUCUUCGGCCAGGCGGCCAACGUCAUCAACAUAAUUUGAAUGCAAUGCUUUUAAUUGCAAACUUGCAUUAAUUAUGAUUGAACAAUUUUA .(------------------((....))).......((((....)))).......(((((((((((..((((((((((........)))...)))))))))))))).))))......... ( -24.90) >DroPse_CAF1 9866 117 - 1 CACGUCCACGGCCAUGGGCACGUCCUCGUCCACCACG-AC--ACGGCCAUCAUCAUCAACAUAAUUUGAAUGCAACGCAUUUAAUUGCAAACUUGCAUUAAUUAUGAUUGAACAAUUUUA .........((((..(((....)))..(((......)-))--..)))).......(((((((((((..(((((((.(((......)))....)))))))))))))).))))......... ( -29.10) >DroEre_CAF1 34168 107 - 1 CACGUC------C------ACGUCCACGUCCUCCACG-CCAGGCGGCCAACGUCAUCAACAUAAUUUGAAUGCAAUGCUUUUAAUUGCAAACUUGCAUUAAUUAUGAUUGAACAAUUUUA .((((.------.------.((((..(((.....)))-...))))....))))..(((((((((((..((((((((((........)))...)))))))))))))).))))......... ( -23.80) >DroYak_CAF1 34172 113 - 1 CACGUCCACAUCC------ACGUCCACGUCCUCCACG-CCGGGCGGCCAACGUCAUCAACAUAAUUUGAAUGCAAUGCUUUUAAUUGCAAACUUGCAUUAAUUAUGAUUGAACAAUUUUA .............------((((...(((((......-..)))))....))))..(((((((((((..((((((((((........)))...)))))))))))))).))))......... ( -26.10) >DroAna_CAF1 53120 89 - 1 UA------------------------------CCACG-UCAGCCCGGCAUCGUCAUCAACAUAAUUUGAAUGCAAUGCUUUUAAUUGCAAACUUGCAUUAAUUAUGAUUGAACAAUUUUA ..------------------------------....(-((.....))).......(((((((((((..((((((((((........)))...)))))))))))))).))))......... ( -18.10) >DroPer_CAF1 10259 117 - 1 CACGUCCACGGCCAUGGGCACGUCCUCGUCCACCACG-AC--ACGGCCAUCAUCAUCAACAUAAUUUGAAUGCAACGCAUUUAAUUGCAAACUUGCAUUAAUUAUGAUUGAACAAUUUUA .........((((..(((....)))..(((......)-))--..)))).......(((((((((((..(((((((.(((......)))....)))))))))))))).))))......... ( -29.10) >consensus CACGUC______C______ACGUCCACGUCCUCCACG_CCAGGCGGCCAACGUCAUCAACAUAAUUUGAAUGCAAUGCUUUUAAUUGCAAACUUGCAUUAAUUAUGAUUGAACAAUUUUA .......................................................(((((((((((..((((((((((........)))...)))))))))))))).))))......... (-15.10 = -15.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:02 2006