| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,286,649 – 19,286,756 |
| Length | 107 |
| Max. P | 0.525020 |
| Location | 19,286,649 – 19,286,756 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.57 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -16.38 |
| Energy contribution | -17.42 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19286649 107 - 22407834 AUUGCCGGAGUCAGUGAAAGUUUUUCGUCGCGAAAUUAUACAAGUUUUCUUCUAACGAUGGAAAACU-CUUAAGUCGUGGGUUUCGCGGUGGCAAAG-------UUACCGAAAGA .((((((........(((.....))).((((((((((..((.((((((((((....)).))))))))-.....))....))))))))))))))))..-------....(....). ( -27.10) >DroSec_CAF1 27761 107 - 1 AUUGCCGGAGUCAGAGAAAGUUUUUCGCCGCGAAAUUAUACAAGUUUUCUUCUAACGAUGGAAAACU-CUUAAGUCGUGGGUUUCGCGGUGGCAAAG-------UUACCGAAAGA .(((((.......((((.....))))(((((((((((..((.((((((((((....)).))))))))-.....))....))))))))))))))))..-------....(....). ( -32.60) >DroSim_CAF1 34569 107 - 1 AUUGCCGGAGUCAGUGAAAGUUUUUCGCCGCGAAAUUAUACAAGUUUUCUUCUAACGAUGGAAAACU-CUUAAGUCGUGGGUUUCGCGGUGGCAAAG-------UUACCGAAAGA .(((((((((............))))(((((((((((..((.((((((((((....)).))))))))-.....))....))))))))))))))))..-------....(....). ( -31.50) >DroEre_CAF1 33690 106 - 1 AUGGCCGGAGUCAGUGAAAGUUUUUCGCCGCGAAAUUAUACAAGUUUUCUGCUAACGAUGGAAAACU-CUUAAGUCGUGGGUUUCGCGGUGGGAAAG--------UUGCGAUAGA .((((....))))(..(...(((..((((((((((((..((.((((((((((....).)))))))))-.....))....))))))))))))..))).--------)..)...... ( -33.60) >DroYak_CAF1 33684 114 - 1 GUGGCCGGAGUCAGUGAAAGUUUUUCGCCGCGAAAUUAUACAAGUUUUCUUCUAACGAUGGAAAACU-CUUAAGUCGUGGGUUUCUCGGCGGAAAACCCACCGCUUACCGAUAGA .(((...((((..(((...(((((((((((.((((((..((.((((((((((....)).))))))))-.....))....)))))).))))))))))).))).)))).)))..... ( -35.40) >DroPer_CAF1 9792 96 - 1 AUUGCCCGAGCAGACGAAAGUUU----CCAUGAAAUUAUGAAAGUUC-------AUGGGGGAAAAAUACGAGAGUCUUGACUUAUGUUGUAGCUGAG-------AAGC-AAAAAA ....(((....((((....))))----(((((((.((....)).)))-------))))))).....(((((((((....))))...)))))(((...-------.)))-...... ( -23.00) >consensus AUUGCCGGAGUCAGUGAAAGUUUUUCGCCGCGAAAUUAUACAAGUUUUCUUCUAACGAUGGAAAACU_CUUAAGUCGUGGGUUUCGCGGUGGCAAAG_______UUACCGAAAGA ....................(((..((((((((((((.(((.((((((((((....)).)))))))).........)))))))))))))))..)))................... (-16.38 = -17.42 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:57 2006