Locus 6922

Sequence ID 2L_DroMel_CAF1
Location 19,286,483 – 19,286,576
Length 93
Max. P 0.697123
window11033

overview

Window 3

Location 19,286,483 – 19,286,576
Length 93
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 79.90
Mean single sequence MFE -19.73
Consensus MFE -12.88
Energy contribution -13.85
Covariance contribution 0.97
Combinations/Pair 1.21
Mean z-score -1.57
Structure conservation index 0.65
SVM decision value 0.34
SVM RNA-class probability 0.697123
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19286483 93 - 22407834
UAUCCUUUCCGCUUAAUGAAAUUACAAUUCAACGGGGAGACCAAGCCAAUCGGUGGCAAUAGCCAAUGGCCAUGUGGAAAAUUC-CGAAUUUAA
.....(((((((....((((.......))))...((....))..((((.....((((....)))).))))...)))))))....-......... ( -23.40)
>DroSec_CAF1 27331 91 - 1
UAUCCUUUCCGCUUAAUGAAAUUACAAUUCAGCAG--AGACCAAGCCAAUCGGUGGCAAUAGCCAUUGGCCAUGUGGAAAAUUC-CGAAUUUAA
.....(((((((....((((.......))))....--.......((((....(((((....)))))))))...)))))))....-......... ( -20.10)
>DroSim_CAF1 34402 93 - 1
UAUCCUUUCCGCUUAAUGAAAUUACAAUUCAGCAGGAAGACCAAGCCAAUCGGUGGCAAUAGCCAAUGGCCAUGUGGAAAAUUC-CGAAUUUAA
....(((((.(((.(((.........))).))).))))).(((.((((.....((((....)))).))))....))).......-......... ( -20.90)
>DroEre_CAF1 33532 93 - 1
UAUCUUUUCCGCUUAAUGAAAUUACAAUUCAGCAAGGAAACCAAGCCAAUCAGUGGCAAAAGCCAAUGGCCACAUGGAAAAUUC-AGAAUUUAA
....(((((((((.(((.........))).)))..(....)...((((.....((((....)))).)))).....))))))...-......... ( -19.10)
>DroYak_CAF1 33526 93 - 1
UAUCUUUUCCGCUUAAUGAAAUUACAAUUCAGCAAGGAAACCAAGCCAAUCAGUGGCAAUAGCCAAUGGCGAUGUGGAAAAUUG-AGAAUUUAA
..(((((((((((.(((.........))).)))..)))).(((.((((.....((((....)))).))))....)))......)-)))...... ( -21.10)
>DroAna_CAF1 52532 85 - 1
UA-AUUUUCUGUUUAAUUUAAUUAACAUUGUCCG-----UCAUCGCCGACCAGUGGCAAUAGCUCGUGGUCAGCUCC---CUCCUCGACUCUAC
..-..........................(((..-----.....((.(((((..(((....)))..))))).))...---......)))..... ( -13.79)
>consensus
UAUCCUUUCCGCUUAAUGAAAUUACAAUUCAGCAGGGAGACCAAGCCAAUCAGUGGCAAUAGCCAAUGGCCAUGUGGAAAAUUC_CGAAUUUAA
.....(((((((....((((.......)))).............((((.....((((....)))).))))...))))))).............. (-12.88 = -13.85 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:56 2006