Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,286,051 – 19,286,166 |
Length | 115 |
Max. P | 0.930006 |
Location | 19,286,051 – 19,286,166 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.93 |
Mean single sequence MFE | -18.07 |
Consensus MFE | -11.95 |
Energy contribution | -12.40 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -1.81 |
Structure conservation index | 0.66 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19286051 115 - 22407834 AAAAAAAAAAAUGUUAAUAAAACCAAGAGGAAGCGCAACAGUCGAGUACCUCGAUUAUCAGACACCCUA-----GCACUCUUCUUUAAGAGGCAAAACGAAUGUUUCCUAAAGUUCACAU ....................(((....((((((((....(((((((...))))))).............-----((.(((((....)))))))........))))))))...)))..... ( -22.40) >DroSec_CAF1 26918 96 - 1 AAAAA--A-AAAGUCUAUAAAACCAAGAGGAAGCGCAACAGUCGUGUACAUCGACUAUCAGUUACCCUAUACUA---------------------UACGAAUGUUUCCUAAAGUUCACAU .....--.-...........(((....((((((((....(((((.......)))))...(((........))).---------------------......))))))))...)))..... ( -14.80) >DroSim_CAF1 33976 109 - 1 AAAAAAAA-AAAGUUAAUAAAACCAAGAGGAAGCGCAACAGUCGAGUAACUCGACUAUUAGAUACCCUAUACUAGCACUCCC----------CAAAACGAAUGUUUCCCAAAGUUCACAU ........-.................(.((((((((...(((((((...)))))))..(((.....))).....))..((..----------......))..)))))))........... ( -17.00) >consensus AAAAAAAA_AAAGUUAAUAAAACCAAGAGGAAGCGCAACAGUCGAGUACCUCGACUAUCAGAUACCCUAUACUAGCACUC____________CAAAACGAAUGUUUCCUAAAGUUCACAU ....................(((....((((((((....((((((.....))))))...((.....)).................................))))))))...)))..... (-11.95 = -12.40 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:55 2006