| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,284,413 – 19,284,503 |
| Length | 90 |
| Max. P | 0.868492 |
| Location | 19,284,413 – 19,284,503 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 74.25 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -9.24 |
| Energy contribution | -10.60 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19284413 90 - 22407834 AGUGGGGGUGAAACUGUUUGUCCU---ACUGCU---CCAUUGAAAAUCCGCCACGGGAGACUUCGAAAAGCAGUUUUCACCCCCCCCCCCCAUACC- ...((((((((((((((((.((..---....((---((..((.........))..)))).....)).)))))).))))))))))............- ( -31.10) >DroSec_CAF1 25282 81 - 1 AGUGGGGGUGAAACUGUUUGUCCU---ACUGCU---CCAUUGAAAAUCCGCCACGGGAGACGUCGAAAAGCAGUUUUC--------C-CCCAUACC- .(((((((.((((((((((.((..---((..((---((..((.........))..))))..)).)).)))))))))))--------)-)))))...- ( -31.10) >DroSim_CAF1 32298 82 - 1 AGUGGGGGUGAAACUGUUUGUCCU---ACUGCU---CCAUUGAAAAUCCGCCACGGGAGACGUCGAAAAGCAGUUUUC--------CCCCCAUACC- .(((((((..(((((((((.((..---((..((---((..((.........))..))))..)).)).)))))))))..--------)))))))...- ( -33.00) >DroEre_CAF1 31645 72 - 1 AGUGGG-UAGAAACUGUUUGUCCU---ACUGCU---CCAUUGAAAAUCCGCCACGGGAGACGGCGAAAGGCA-----------------CCAUUCC- ((((((-((((.....)))).)))---))).((---((..((.........))..))))..(.(....).).-----------------.......- ( -15.50) >DroYak_CAF1 31588 82 - 1 AGUGGG-GAGAAACUGUUUGUCCU---ACUGCU---CCAUUGAAAAUCCGCCACGGGAGACGUGGAAAAGCAGUUUUU-------CCCCCCAUUCC- .(.(((-((((((((((((.(((.---((..((---((..((.........))..))))..))))).)))))))))))-------)))).).....- ( -35.10) >DroAna_CAF1 50657 84 - 1 AG-------------CUUUGUCCUCGUAAUGCCCGCCCCUUGAGAAUCCAUCACGGGAGCUGUCAAAAGGCGGUAGCCCCAGUGCCAGCCCAUCCCA .(-------------((..(..((.(...((((.(((..((((.(.(((......)))..).))))..)))))))...).))..).)))........ ( -20.50) >consensus AGUGGG_GUGAAACUGUUUGUCCU___ACUGCU___CCAUUGAAAAUCCGCCACGGGAGACGUCGAAAAGCAGUUUUC________CCCCCAUACC_ .(((((......((.....))......((((((......((((...(((......)))....))))..))))))..............))))).... ( -9.24 = -10.60 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:55 2006