Locus 6918

Sequence ID 2L_DroMel_CAF1
Location 19,280,763 – 19,280,871
Length 108
Max. P 0.552090
window11029

overview

Window 9

Location 19,280,763 – 19,280,871
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.44
Mean single sequence MFE -33.80
Consensus MFE -23.15
Energy contribution -23.35
Covariance contribution 0.20
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.68
SVM decision value 0.04
SVM RNA-class probability 0.552090
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19280763 108 - 22407834
AU-GCCGUAAUUAAUGGCCCAUCGC-----------CGGCAUCGCGUUAAUGGACAGAUGCUGAGCCCGCGACCCUUGACCCUCCGCACAAUGCGAUAAGGUCUUCAUUUGGCAUUCUCA
((-((((.....(((((....((((-----------.(((.(((((((........))))).))))).)))).....((((...(((.....)))....)))).)))))))))))..... ( -32.00)
>DroPse_CAF1 1353 100 - 1
GU-GCCGUAAUUAAUGGCCCAUCGCAG--------UCGGCAUCGUUUUAAUGGACAGAUGCUGGGCCU-----------CUCUCUGCAUAAAGCGAUAAGGUCUUCAUUUGGCAUUCUCA
((-((((.(((.((.((((.(((((..--------((((((((((((....)))).))))))))((..-----------......)).....)))))..)))))).)))))))))..... ( -31.60)
>DroEre_CAF1 28172 107 - 1
AU-GCCGUAAUUAAUGGCCCAUCGC-----------CGGCAUCGCUUUAAUGGACAGAUGCUGAGCCCGCGACCCUUGACCCU-CGCACAAUGCGAUAAGGUCUUCAUUUGGCAUUCUCA
((-((((.(((.((.((((.(((((-----------(((((((.((.....))...))))))).....((((..........)-))).....)))))..)))))).)))))))))..... ( -32.20)
>DroYak_CAF1 28040 109 - 1
UGGCCCGUAAUUAAUGGCCCAUCGC-----------CGGCAUCGCUUUAAUGGACAGAUGCUGAGCCCGCGACCCUUGACCCUCCGCACAAUGCGAUAAGGUCUUCAUUUGGCAUUCUCA
(((.((((.....)))).)))..((-----------(((((((.((.....))...))))))).))..((.(.....((((...(((.....)))....))))......).))....... ( -29.90)
>DroAna_CAF1 44201 114 - 1
GU-GCCGUAAUUAAUGGCCCAUCUCGGGUCCCGGCUCGGCAUCGUUUUAAUGGACAGAUGCCGGGCGG-----ACUGGAAGCGCCGCAUAAAGCGAUAAGGUCUUCAUUUGGCAUUCUCA
((-((((.(((.((.((((....((.(((((..((((((((((((((....)))).))))))))))))-----))).)).....(((.....)))....)))))).)))))))))..... ( -45.50)
>DroPer_CAF1 1715 100 - 1
GU-GCCGUAAUUAAUGGCCCAUCGCAG--------UCGGCAUCGUUUUAAUGGACAGAUGCUGGGCCU-----------CUCUCUGCAUAAAGCGAUAAGGUCUUCAUUUGGCAUUCUCA
((-((((.(((.((.((((.(((((..--------((((((((((((....)))).))))))))((..-----------......)).....)))))..)))))).)))))))))..... ( -31.60)
>consensus
GU_GCCGUAAUUAAUGGCCCAUCGC___________CGGCAUCGCUUUAAUGGACAGAUGCUGAGCCC_____CCUUGACCCUCCGCACAAAGCGAUAAGGUCUUCAUUUGGCAUUCUCA
...((((.(((.((.((((.(((((...........(((((((.............))))))).((...................)).....)))))..)))))).)))))))....... (-23.15 = -23.35 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:53 2006