Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,280,309 – 19,280,407 |
Length | 98 |
Max. P | 0.877689 |
Location | 19,280,309 – 19,280,407 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -26.32 |
Consensus MFE | -16.61 |
Energy contribution | -17.30 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.22 |
Mean z-score | -2.13 |
Structure conservation index | 0.63 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19280309 98 + 22407834 AAUCAGAUGAGCAGGAGCUACAAUCUUUGAGUGAAUAGCUGAAUAGCA------------GACCACAACUCAAAUGUGAUUUAGGCAAAGCUCGCAUUCUGCUCAAUUAU .......(((((((((((((((...(((((((......(((.....))------------)......))))))))))).....(((...))).)).)))))))))..... ( -26.70) >DroSec_CAF1 21401 98 + 1 AUUCAGAUGAGCAGGAGCUGCAAUCUUUGAGUGAAUAGCUGAAUAGCA------------GACCACUACUCAAGUGUGAUUUAGCCAAAGCUCGCUUUCUGCUCAAUUAU .......((((((((.((((.((((((((((((.....(((.....))------------).....))))))))...)))))))))((((....)))))))))))..... ( -27.20) >DroSim_CAF1 28340 98 + 1 AAUCAGAUGAGCAGUAGCUACAAUCUUUGAGUGAAUAGCUGAAUAGCA------------GACCACUACUCCAAUGUGAUUUAGGUAGAGUUCGCUUUCUGCUCAAUUAU .......(((((((.(((......(((((..(((((.(((....))).------------...(((.........))))))))..)))))...)))..)))))))..... ( -22.90) >DroYak_CAF1 27566 107 + 1 AAUCUGAUGGGUAGGAGAUAAAAUGUCUGAGUCAAUGGCUGAAUAGCAGCCACAGAACAAGACUGCCACUCAAA---GAUUUAGUCAAAGUUAGCUUUUUGCUCAAUUAU .......((((((((((.(((..((.(((((((..((((((.....))))))(((.......))).........---))))))).))...)))..))))))))))..... ( -28.50) >consensus AAUCAGAUGAGCAGGAGCUACAAUCUUUGAGUGAAUAGCUGAAUAGCA____________GACCACUACUCAAAUGUGAUUUAGGCAAAGCUCGCUUUCUGCUCAAUUAU .......(((((((((((......(((((..(((((.(((....)))................(((.........))))))))..)))))...)).)))))))))..... (-16.61 = -17.30 + 0.69)
Location | 19,280,309 – 19,280,407 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -13.47 |
Energy contribution | -14.53 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.14 |
Mean z-score | -2.70 |
Structure conservation index | 0.50 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19280309 98 - 22407834 AUAAUUGAGCAGAAUGCGAGCUUUGCCUAAAUCACAUUUGAGUUGUGGUC------------UGCUAUUCAGCUAUUCACUCAAAGAUUGUAGCUCCUGCUCAUCUGAUU .....(((((((.....(((((.......((((...(((((((.((((.(------------((.....)))))))..)))))))))))..))))))))))))....... ( -27.30) >DroSec_CAF1 21401 98 - 1 AUAAUUGAGCAGAAAGCGAGCUUUGGCUAAAUCACACUUGAGUAGUGGUC------------UGCUAUUCAGCUAUUCACUCAAAGAUUGCAGCUCCUGCUCAUCUGAAU .....(((((((((((....))))((((.((((....(((((((((((.(------------((.....)))))))).)))))).))))..)))).)))))))....... ( -29.30) >DroSim_CAF1 28340 98 - 1 AUAAUUGAGCAGAAAGCGAACUCUACCUAAAUCACAUUGGAGUAGUGGUC------------UGCUAUUCAGCUAUUCACUCAAAGAUUGUAGCUACUGCUCAUCUGAUU .....(((((((..((((.(((((((((((......)))).)))).))).------------))))....((((((((.......))..)))))).)))))))....... ( -28.20) >DroYak_CAF1 27566 107 - 1 AUAAUUGAGCAAAAAGCUAACUUUGACUAAAUC---UUUGAGUGGCAGUCUUGUUCUGUGGCUGCUAUUCAGCCAUUGACUCAGACAUUUUAUCUCCUACCCAUCAGAUU ....((((((((((((....)))).........---.(((((((((((((.........)))))))))))))...))).))))).......................... ( -23.90) >consensus AUAAUUGAGCAGAAAGCGAACUUUGCCUAAAUCACAUUUGAGUAGUGGUC____________UGCUAUUCAGCUAUUCACUCAAAGAUUGUAGCUCCUGCUCAUCUGAUU .....(((((((...........................(((((((.................)))))))(((((.((.......))...))))).)))))))....... (-13.47 = -14.53 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:52 2006