Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,279,740 – 19,279,830 |
Length | 90 |
Max. P | 0.710106 |
Location | 19,279,740 – 19,279,830 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 92.87 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -21.64 |
Energy contribution | -21.60 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.17 |
Mean z-score | -1.43 |
Structure conservation index | 0.83 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19279740 90 + 22407834 UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAAUAAGAAGAAGAGCGCUUCAGUUGUUUCGCCCUGAACUGCA .((((((((...(((((.((((.......))(((((.......)))))........)).))))).....(......)))))))))..... ( -27.30) >DroSec_CAF1 20839 90 + 1 UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUCCA .((((((((...((((..(((...))).))))(((((.((((((((((........)))))).)))).....)))))))))))))..... ( -25.60) >DroSim_CAF1 27791 90 + 1 UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUCCA .((((((((...((((..(((...))).))))(((((.((((((((((........)))))).)))).....)))))))))))))..... ( -25.60) >DroEre_CAF1 27264 88 + 1 UUUCAGGGCCC--GCUGCCCGCACCAAAAGCGGAAAUUAAGUUUUUCCAGAAGGAAGGAGAGCGCUUCAGUUGUUUCUCCUUGAGCUGCA .....((((..--...))))(((.(......(((((.......)))))..(((((..((.(((......))).))..)))))..).))). ( -26.60) >DroYak_CAF1 26994 88 + 1 UUUCAGGGCCC--ACUCCUCGCACCAAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUGCA .((((((((..--.((((((((.......))(((((.......))))).....).)))))(((......))).....))))))))..... ( -25.10) >consensus UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUGCA .((((((((....((((.((((.......))(((((.......)))))........)).))))((....))......))))))))..... (-21.64 = -21.60 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:50 2006