| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,278,141 – 19,278,237 |
| Length | 96 |
| Max. P | 0.594783 |
| Location | 19,278,141 – 19,278,237 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 84.04 |
| Mean single sequence MFE | -25.84 |
| Consensus MFE | -15.94 |
| Energy contribution | -15.66 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19278141 96 + 22407834 AAAUUAAAUAGAAACACAUUGCUGCGGCGAAG---GGCGUGGGGCGGGUCGCGGAGGAAGCUGAACGGAAACGGGCGAAUGGGUGGGUGUGGCAACCAU ..............(((.((((((((.(....---).)))..))))).((((..((....))...((....)).))))....)))(((......))).. ( -25.90) >DroSec_CAF1 19285 80 + 1 AAAUUAAAUAGAAACACAUUGCUGCGGCGAAG---GGCG--------------GGCGAAGCUGAAUGGAAACGGGCGAAUG--UGGGCGUGGCAGCCAU ..............(((((((((.((.(....---).))--------------)))...(((...((....))))).))))--))(((......))).. ( -23.70) >DroSim_CAF1 26225 80 + 1 AAAUUAAAUAGAAACACAUUGCUGCGGCGAAG---GGCG--------------GGCGAAGCUGAACGGAAACGGGCGAAUG--UGGGCGUGGCAGCCAU ..............(((((((((.((.(....---).))--------------)))...(((...((....))))).))))--))(((......))).. ( -25.20) >DroEre_CAF1 25767 79 + 1 AAAUUAAAUAGAAACACAUUGCUGCGGCCCACGCGGGCG--------------G--G-GGCUGAACGGAAACG-GCGAAUG--UGGGCGUGGCAGCCAU ..............((((((((..((((((.((....))--------------.--)-)))))..((....))-)).))))--))(((......))).. ( -31.30) >DroYak_CAF1 25438 79 + 1 AAAUUAAAUAGAAACACAUUUCUGCGGCGAAC--GGGCG--------------G--GAAGCUGAACGGAAACGGGCGAACG--UGGGCGUGGCAGCCAU .....................((((.(((.((--((((.--------------.--...)))(..((....))..)...))--)...))).)))).... ( -23.10) >consensus AAAUUAAAUAGAAACACAUUGCUGCGGCGAAG___GGCG______________G__GAAGCUGAACGGAAACGGGCGAAUG__UGGGCGUGGCAGCCAU ..................((((..((.(.......(((.....................)))(..((....))..).........).))..)))).... (-15.94 = -15.66 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:48 2006