Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,010,630 – 2,010,760 |
Length | 130 |
Max. P | 0.965581 |
Location | 2,010,630 – 2,010,729 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.87 |
Mean single sequence MFE | -29.37 |
Consensus MFE | -26.27 |
Energy contribution | -26.27 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.51 |
Structure conservation index | 0.89 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2010630 99 + 22407834 AAA----CU---A-AUUU-C-------AUUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCGCUGAUCUUC ...----..---.-...(-(-------(.(.(((((((((((((.......))))).....((.((((((....)))))).)).............)))))))).).)))..... ( -28.50) >DroVir_CAF1 20063 106 + 1 AAAUAAAAGAAGA-AUUCGA-------ACUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCCAUACGAUCU-C ...........((-.(((((-------((((.((.....))))).)))))).))((((((.((.((((((....)))))).))..((((......))))........))))))-. ( -28.10) >DroPse_CAF1 33553 107 + 1 AAAAAAAAG---A-UUUU-C---AGAAAUCAAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCUCUGAACGCC .........---.-..((-(---(((.....(((((((((((((.......))))).....((.((((((....)))))).)).............)))))))).)))))).... ( -31.80) >DroGri_CAF1 45605 105 + 1 AAAGGAAAG----------AUCGCUAAGCUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCCAUAUGGUCUUC ......(((----------(((((...))...((((((((((((.......))))).....((.((((((....)))))).)).............))))))).....)))))). ( -30.50) >DroEre_CAF1 25284 95 + 1 AAA----UG---A-ACU------------UCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCACUGAUCUCC ...----..---.-...------------..(((((((((((((.......))))).....((.((((((....)))))).)).............))))))))........... ( -27.00) >DroAna_CAF1 25546 101 + 1 AAA----GU---AUAUUU-C------GAUUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCACUGAUCGUG ...----..---......-(------((((.(((((((((((((.......))))).....((.((((((....)))))).)).............))))))))....))))).. ( -30.30) >consensus AAA____AG___A_AUUU_C_______AUUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCUCUGAUCUUC ................................((((((((((((.......))))).....((.((((((....)))))).)).............)))))))............ (-26.27 = -26.27 + 0.00)
Location | 2,010,630 – 2,010,729 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.87 |
Mean single sequence MFE | -30.27 |
Consensus MFE | -26.95 |
Energy contribution | -26.73 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.49 |
Structure conservation index | 0.89 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2010630 99 - 22407834 GAAGAUCAGCGAGGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCUGAAU-------G-AAAU-U---AG----UUU .....(((...((((((((.(((((........)))))(((((.......)))))....(((((.......)))))))))))))...)-------)-)...-.---..----... ( -29.10) >DroVir_CAF1 20063 106 - 1 G-AGAUCGUAUGGGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCUGAGU-------UCGAAU-UCUUCUUUUAUUU (-.(((((((.((((((..((((((........)))).)).......))))))))))))))((((((.((.(((((......))))))-------).))))-))........... ( -30.60) >DroPse_CAF1 33553 107 - 1 GGCGUUCAGAGAGGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCUUGAUUUCU---G-AAAA-U---CUUUUUUUU ((..(((((((((((((((.(((((........)))))(((((.......)))))....(((((.......))))))))))))))....)))---)-))..-)---)........ ( -34.30) >DroGri_CAF1 45605 105 - 1 GAAGACCAUAUGGGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCUGAGCUUAGCGAU----------CUUUCCUUU (((((.(....((((((((.(((((........)))))(((((.......)))))....(((((.......)))))))))))))..((...))).)----------))))..... ( -28.90) >DroEre_CAF1 25284 95 - 1 GGAGAUCAGUGAGGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCUGA------------AGU-U---CA----UUU ...((....(.((((((((.(((((........)))))(((((.......)))))....(((((.......))))))))))))).)------------...-)---).----... ( -28.70) >DroAna_CAF1 25546 101 - 1 CACGAUCAGUGAGGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCUGAAUC------G-AAAUAU---AC----UUU ..((((...(.((((((((.(((((........)))))(((((.......)))))....(((((.......))))))))))))).))))------)-......---..----... ( -30.00) >consensus GAAGAUCAGAGAGGUUCCAUGGUGUAAUGGUUAGCACUCAGGACUCUGAAUCCUGCGAUCCGAGUUCAAAUCUCGGUGGAACCUGAAU_______G_AAAU_U___CU____UUU ...........((((((((.(((((........)))))(((((.......)))))....(((((.......)))))))))))))............................... (-26.95 = -26.73 + -0.22)
Location | 2,010,649 – 2,010,760 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -18.90 |
Energy contribution | -18.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.70 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2010649 111 + 22407834 UCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCGCUGAUCUUCCAAUUUUCUAAAGAGAUCCAAAAAUAGCAAC ....(((((.......)))))....((((((.....))))))..(((((.((((......)))).........((((((.............))))))......))))).. ( -26.32) >DroPse_CAF1 33580 99 + 1 UCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCUCUGAACGCCG----UGCAAC--------ACCAUUAGCGGU ...((((.((((((....))))))(((((.((((((((((((.(((..........))))).)))....)))))))..)).----)))...--------........)))) ( -28.60) >DroGri_CAF1 45630 97 + 1 UCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCCAUAUGGUCUUCCAA----UAAA----------AAAUAGAUAG ....(((((.......)))))(((..((.((((((....)))))).)).............(((((.((....))..))))).----....----------.....))).. ( -22.60) >DroMoj_CAF1 19098 97 + 1 UCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCGAUGCGAUCGUUUGU----CAAA----------AAGUCGACAG .....((((.......))))((((((((.((((((....)))))).))..((((......)))).......))))))...(((----(...----------.....)))). ( -28.20) >DroAna_CAF1 25567 111 + 1 UCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCACUGAUCGUGCUCUAGUCUUUACAGAUAUAAAAUUAUCUGC ..(((((((.......))))((((.((((((.....))))))((((....((((......)))).....)))))))))))............((((((......)))))). ( -28.40) >DroPer_CAF1 32419 99 + 1 UCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCUCUGAACGCCG----UGCAAC--------ACCAUUAGCGGU ...((((.((((((....))))))(((((.((((((((((((.(((..........))))).)))....)))))))..)).----)))...--------........)))) ( -28.60) >consensus UCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCUCUGAUCGUCC____U_CAAA________A_AAUUAGCGAC (((((((((.......))))).....((.((((((....)))))).)).............)))).............................................. (-18.90 = -18.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:01 2006