Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,271,343 – 19,271,455 |
Length | 112 |
Max. P | 0.949873 |
Location | 19,271,343 – 19,271,455 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 88.38 |
Mean single sequence MFE | -39.34 |
Consensus MFE | -31.46 |
Energy contribution | -33.78 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.07 |
Mean z-score | -2.13 |
Structure conservation index | 0.80 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.949873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19271343 112 + 22407834 CCAGCCAUCUGCCAACUCGAGUGGCCAGCCAAUUAGCGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGA ...((((((((((.(((((.(((.((((((.......)))...))).)))...)))))..............((((......))))))))))..)))).........----..... ( -39.20) >DroSec_CAF1 12576 105 + 1 CCAG-------CCCACUCGAAUGGCCAGCCAAUUAGUGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGA ((((-------.(((((((..(((((.((((.....)))).....))).))..)))))))...........((.(((((......))))).))))))..........----..... ( -32.70) >DroSim_CAF1 19464 112 + 1 CCAGCCAUCUGCCCACUCGAGUGGCCAGCCAAUUAGUGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGA ...((((((((((((((((.(((.(((((((.....))))...))).)))...)))))).............((((......))))))))))..)))).........----..... ( -42.70) >DroEre_CAF1 19363 115 + 1 -GAGCUUUAGGCCCACUCGAGUGGCCGGCCAAUUAGCGGCAUUUGGGCACGCCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAACUCGAAUGGCAUGGC -..(((....(((...((((((.(((((((..((.((((((((((((....))))))))(((((......)))))......))))))..))..)))))..))))))..)))..))) ( -43.90) >DroYak_CAF1 18540 106 + 1 CCAGCCAUCUGCCCACUCGAGUGGCCAGCCAAUUAGCAGCAUUUGGGCACGCCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUC----------GC ...((((((((((((((((.((((((.((......))..(....)))).))).)))))).............((((......))))))))))..))))......----------.. ( -38.20) >consensus CCAGCCAUCUGCCCACUCGAGUGGCCAGCCAAUUAGCGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA____AUCGA ...((((((((((((((((.(((.((((((.......)))...))).)))...)))))).............((((......))))))))))..)))).................. (-31.46 = -33.78 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:32 2006