Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,271,151 – 19,271,271 |
Length | 120 |
Max. P | 0.761091 |
Location | 19,271,151 – 19,271,271 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.46 |
Mean single sequence MFE | -32.93 |
Consensus MFE | -28.28 |
Energy contribution | -28.97 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.76 |
Structure conservation index | 0.86 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19271151 120 - 22407834 UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCGUUCUCGUUCUCCUUCCC ...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))........................ ( -33.60) >DroSec_CAF1 12390 114 - 1 UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCGUUCUCGU------UCCC ...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))..............------.... ( -33.60) >DroSim_CAF1 19272 120 - 1 UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCGUUCUCGUUCUCGUUCGC ...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))........................ ( -33.60) >DroEre_CAF1 19224 91 - 1 UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAG------------CACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCG----------------- ...((.((((.(((......(((((((((((((...((.(------------((......))))))))))).))))))).....))).))))..)).......----------------- ( -28.60) >DroYak_CAF1 18376 103 - 1 UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCGCGCUCCUUUGCAUAAUCAGCAGUCCCG----------------- ...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..)).......----------------- ( -33.20) >DroAna_CAF1 34776 103 - 1 AUGGGCAUUACGCAUACGCCGGAUGGCCGCAUUACAAGAGCUGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGCCACGCUCCUUUGCAUAAUCAGGAGUCCCU----------------- ...(((...........)))((.(((((((((((((((((.(((((...)))))))))..))..))))))).)))).((((((..........)))))).)).----------------- ( -35.00) >consensus UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCG_________________ ...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))........................ (-28.28 = -28.97 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:31 2006