Locus 6905

Sequence ID 2L_DroMel_CAF1
Location 19,270,794 – 19,270,886
Length 92
Max. P 0.822490
window11004

overview

Window 4

Location 19,270,794 – 19,270,886
Length 92
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 72.45
Mean single sequence MFE -30.74
Consensus MFE -12.21
Energy contribution -15.09
Covariance contribution 2.88
Combinations/Pair 1.26
Mean z-score -1.89
Structure conservation index 0.40
SVM decision value 0.69
SVM RNA-class probability 0.822490
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19270794 92 - 22407834
GGAUUGAGAUGCCUAAGUGGCCGCCACUCCCCAUCCACUAGACUCUGAGUUU------------GAUAUGGGGGCAUUGGGCAUCGCAUCCCAGCAGAAGUUGA
((((.(.(((((((((((((...))))(((((((....(((((.....))))------------)..)))))))..))))))))).)))))((((....)))). ( -35.60)
>DroSec_CAF1 12039 89 - 1
GGAUUGAGAUGCCUAAGUGGC---CACUCCCCGUCCACCAGACUCUGAGUUU------------GAUAUGGGGGCAUUGGGCAUCGCAUCCCAGCAGAAGUUGA
((((.(.(((((((((...((---(....(((((....(((((.....))))------------)..)))))))).))))))))).)))))((((....)))). ( -34.70)
>DroSim_CAF1 18921 89 - 1
GGAUUGAGAUGCCUAAGUGGC---CACUCCCCAUCCACCAGACUCUGAGCUU------------GAUAUGGGGGCAUUGGGCAUCGCAUCCCAGCAGAAGUUGA
((((.(.(((((((((...((---(....(((((....((..(.....)..)------------)..)))))))).))))))))).)))))((((....)))). ( -30.60)
>DroYak_CAF1 18050 75 - 1
GGAUUGUGAUGCCUAAGUGGC---CACUCUCCAUCCACCAGGCCCAGAGUUU------------GAUAUGGGGGCAUCG--------------GUGGAAGUUGA
(((..(((..(((.....)))---)))..))).((((((..((((...((..------------...))..))))...)--------------)))))...... ( -29.60)
>DroAna_CAF1 34439 91 - 1
GGAUUGUGCCGCCUAAGUGGC---CACUCUCCUUCCAAAGGAUUUUUAUAUUUUUUUUUCGUUCAAAGGGGAGGGACUG----------CUCUGCAGAAGUUGA
.((.((.(((((....)))))---)).))((((((((((((((......)))))))..((.......)))))))))(((----------(...))))....... ( -23.20)
>consensus
GGAUUGAGAUGCCUAAGUGGC___CACUCCCCAUCCACCAGACUCUGAGUUU____________GAUAUGGGGGCAUUGGGCAUCGCAUCCCAGCAGAAGUUGA
((..((.((((((((((((.....)))(((((((.................................)))))))..))))))))).))..))............ (-12.21 = -15.09 +   2.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:30 2006