Locus 6902

Sequence ID 2L_DroMel_CAF1
Location 19,266,989 – 19,267,109
Length 120
Max. P 0.852591
window11000

overview

Window 0

Location 19,266,989 – 19,267,109
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.56
Mean single sequence MFE -34.48
Consensus MFE -31.39
Energy contribution -31.78
Covariance contribution 0.39
Combinations/Pair 1.06
Mean z-score -1.52
Structure conservation index 0.91
SVM decision value 0.79
SVM RNA-class probability 0.852591
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19266989 120 + 22407834
UGUGCAGAGAUCUUGUAACUGGGUAACUACGAGCAGUAAGUACCUGCUGCUGGUACUACGAGUAAUUUCCUUAAUGAUGUUGCACCACCGUGGCAUUAUCUUGUUUGUUGCCCUGGCCUU
..(((((.....))))).(.((((((((((.(((((((......))))))).)))..(((((...........(((((((..(......)..))))))))))))..))))))).)..... ( -36.10)
>DroSec_CAF1 8493 120 + 1
UGUGCAGAGAUCUUGUAACUGGGUAACUACGAGCAGUAAGUACCUGCUGCUGGUACUACGAGUAAUUUCCUUAAUGAUGUUGCACCACCGUGGCAUUAUCUUGUUUGUUGCCCUGGCCUU
..(((((.....))))).(.((((((((((.(((((((......))))))).)))..(((((...........(((((((..(......)..))))))))))))..))))))).)..... ( -36.10)
>DroSim_CAF1 15276 120 + 1
UGUGCAGAGAUCUUGUAACUGGGUAACUACGAGCAGUAAGUACCUGCUGCUGGUACUACGAGUAAUUUCCUUAAUGAUGUUGCACCACCGUGGCAUUAUCUUGUUUGUUGCCCUGGCCUU
..(((((.....))))).(.((((((((((.(((((((......))))))).)))..(((((...........(((((((..(......)..))))))))))))..))))))).)..... ( -36.10)
>DroEre_CAF1 15184 112 + 1
--------GAUCUUGUAACUGGGUAACUACGAGCAGUAAGUACCUGCUGCUGGUACUAAGAGUAAUUUCCUUAAUGAUGUUGCACCGCUGUGGCAUUAUCUUGUUUGCUGCCCUGGCCUU
--------..........(.((((...(((.(((((((......))))))).))).....(((((........(((((((..((....))..))))))).....))))))))).)..... ( -31.02)
>DroYak_CAF1 14210 120 + 1
UGUGCAGAGAUCUUGUAACUGGGUAACUACGAGCAGUAAGUACCUGCUGCUGGUACUACGAGUAAUUUCCUAAAUGAUGUUGCACCGCUGUGGCAUUAUCUUGUUUGUUGCCCUGGCCUU
..(((((.....))))).(.((((((((((.(((((((......))))))).)))..(((((...........(((((((..((....))..))))))))))))..))))))).)..... ( -36.70)
>DroAna_CAF1 30274 106 + 1
--------------AGAACUGGGUAACUAACAGCAGUAAGUACCUGCUGCCUGUAUUACAAGUAAUUUCCUUAAUGAUGUUGCACCGCUGUGGCAUUAUCUUGUUUGUUGCUCUGCCCGC
--------------......(((((....(((((((((......))))).))))......((((((.......(((((((..((....))..))))))).......)))))).))))).. ( -30.84)
>consensus
UGUGCAGAGAUCUUGUAACUGGGUAACUACGAGCAGUAAGUACCUGCUGCUGGUACUACGAGUAAUUUCCUUAAUGAUGUUGCACCACCGUGGCAUUAUCUUGUUUGUUGCCCUGGCCUU
..................(.((((((((((.(((((((......))))))).)))..(((((...........(((((((..(......)..))))))))))))..))))))).)..... (-31.39 = -31.78 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:27 2006