Locus 6900

Sequence ID 2L_DroMel_CAF1
Location 19,265,703 – 19,265,801
Length 98
Max. P 0.579942
window10997

overview

Window 7

Location 19,265,703 – 19,265,801
Length 98
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.73
Mean single sequence MFE -32.16
Consensus MFE -23.20
Energy contribution -25.68
Covariance contribution 2.48
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.72
SVM decision value 0.09
SVM RNA-class probability 0.579942
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19265703 98 + 22407834
GCU-----------GCCUUCUGCGGCAAAUGUUCGAGAUGAAAGUAAUCUUGUGUGUCCCGCAUGGAGCAUCUGCGGAAAUGCAAACCAAUAUUACUGGAAAUUUCAUU
(((-----------((.....)))))........(((((...((((((.((((((((.(((((.(......))))))..)))))...))).))))))....)))))... ( -25.80)
>DroSec_CAF1 7121 109 + 1
UCUGCGGAUGGUUUGCCUUCUGCGGCAAAUGUUCGAGGUGAAAGUAAUCUUGUGUGUCCCGCAUGGAGCAUCUGCGGAAAUGCAAACCAAUAUUACUGGAAAUUUCAUU
........((((((((.((((((((...(((((((((((.......)))))(((((...))))).))))))))))))))..)))))))).................... ( -32.70)
>DroSim_CAF1 13864 109 + 1
GCUGCGGAUGGUUUGCCUUCUGCGGCAAAUGUUCGAGAUGAAAGUAAUCUUGUGUGUCCCGCAUGGAGCAUCUGCGGAAAUGCAAACCAAUAUUACUGGAAAUUUCAUU
((((((((.((....)).))))))))........(((((...((((((.((((((((.(((((.(......))))))..)))))...))).))))))....)))))... ( -35.30)
>DroEre_CAF1 13851 109 + 1
GCUGCAAAUGGCUUGCCUUCUGCGGCAAAUGUUCGAGAUGAAAGUAAUCUGGUUUGUCCCGCAUGUAGCAUCUGCGGAAAUGCAAACCAAUAUUACUGGAAAUUCUAUU
((((((...((....))...)))))).........(((....((((((.((((((((.(((((.(......))))))....))))))))..))))))......)))... ( -33.70)
>DroYak_CAF1 12873 109 + 1
GCUGCAAAUGGUUUGCCUUCUGCGGCAAAUGUUCGAGAUGAAAGUAAGCUGGUGUGUCCCGCAUGGAUCAUCUGCGGAAGUGCAAACCAAUAUUACUAGAAAUUUCAUU
........((((((((((((((((((.....(((.....))).....)))((((.((((.....)))))))).))))))).)))))))).................... ( -33.30)
>consensus
GCUGCAAAUGGUUUGCCUUCUGCGGCAAAUGUUCGAGAUGAAAGUAAUCUUGUGUGUCCCGCAUGGAGCAUCUGCGGAAAUGCAAACCAAUAUUACUGGAAAUUUCAUU
........((((((((.((((((((...(((((((((((.......)))))(((((...))))).))))))))))))))..)))))))).................... (-23.20 = -25.68 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:24 2006