Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,009,136 – 2,009,274 |
Length | 138 |
Max. P | 0.900453 |
Location | 2,009,136 – 2,009,239 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 82.64 |
Mean single sequence MFE | -28.67 |
Consensus MFE | -26.82 |
Energy contribution | -26.82 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.94 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2009136 103 - 22407834 UUCUUU-GCUUAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCGCUUGUCAAUGAGUCGUC (((.((-(..((...((((((((((((.......))))).....((.((((((....)))))).)).............)))))))...)).))).)))..... ( -28.00) >DroPse_CAF1 31259 95 - 1 ---------AAAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCAUUUGCGAUGCUGCCGUC ---------......(((..(.(((((.......)))))(((((((.((((((....)))))).))..((((......))))........))))))..)))... ( -28.70) >DroGri_CAF1 44337 104 - 1 AAGUAAUCGUACUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCUCUUACAAAUUGAGUGUC .........((((((((((((((((((.......))))).....((.((((((....)))))).)).............)))))))..........)))))).. ( -29.70) >DroMoj_CAF1 17777 104 - 1 AUGCAACUCGAAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCACCAAUGAAUUUUCUGUC ...............((((((((((((.......))))).....((.((((((....)))))).)).............))))))).................. ( -26.90) >DroAna_CAF1 23987 102 - 1 A-CUUA-UUCGAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCGAAUGUCUUUCUGGCGUC .-....-........((((((((((((.......))))).....((.((((((....)))))).)).............)))))))..(((((.....))))). ( -30.00) >DroPer_CAF1 30111 95 - 1 ---------AAUUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCAUUUGCGAUGCUGCCGUC ---------......(((..(.(((((.......)))))(((((((.((((((....)))))).))..((((......))))........))))))..)))... ( -28.70) >consensus A__U_A___AAAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUGCUAACCAUUACACCAUGGAACCACUUGCGAAUCUGCCGUC ...............((((((((((((.......))))).....((.((((((....)))))).)).............))))))).................. (-26.82 = -26.82 + -0.00)
Location | 2,009,176 – 2,009,274 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 72.57 |
Mean single sequence MFE | -18.24 |
Consensus MFE | -15.61 |
Energy contribution | -16.30 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.06 |
Mean z-score | -1.05 |
Structure conservation index | 0.86 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2009176 98 - 22407834 UGUAUUGAACAAAAUAA-AAAUAAAUAACAAAAAAGUUCUUU-GCUUAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUG .(((..((((.......-.................))))..)-))...((((((((..(((((.......)))))(((....)))...))).)))))... ( -19.26) >DroPse_CAF1 31299 77 - 1 UAUA---AA--AAAUAC-C-----GU---AAAGCAG---------AAAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUG ....---..--.....(-(-----(.---....(((---------(..((.((.....))))..))))....)))....((((((.....)))))).... ( -16.90) >DroGri_CAF1 44377 90 - 1 ----UUUAAA-AAGUUCUAAAUAAAU---GAAAA--AAGUAAUCGUACUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUG ----......-...............---.....--.........(((((((((((..(((((.......)))))(((....)))...))).)))))))) ( -19.50) >DroPer_CAF1 30151 77 - 1 UAUA---AA--AAAUAC-C-----GU---AAAGCAG---------AAUUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUG ....---..--.....(-(-----(.---....(((---------(.(((.((.....))))).))))....)))....((((((.....)))))).... ( -17.30) >consensus UAUA___AA__AAAUAC_A_____AU___AAAAAAG_________AAAUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCAGGAUUCAGAGUCCUGAGUG ..............................................((((((((((..(((((.......)))))(((....)))...))).))))))). (-15.61 = -16.30 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:58 2006