Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,263,465 – 19,263,567 |
Length | 102 |
Max. P | 0.815487 |
Location | 19,263,465 – 19,263,567 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.79 |
Mean single sequence MFE | -12.69 |
Consensus MFE | -11.76 |
Energy contribution | -11.92 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.93 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19263465 102 + 22407834 UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------ ....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -13.09) >DroSec_CAF1 4857 102 + 1 UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------ ....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -13.09) >DroSim_CAF1 10634 102 + 1 UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------ ....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -13.09) >DroEre_CAF1 11582 102 + 1 UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGACUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCACACAAAAAGC------ ....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -11.99) >DroYak_CAF1 10634 102 + 1 UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGACUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------ ....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -11.99) >DroAna_CAF1 26262 120 + 1 AAAAAAAGUUGAAAAAAAUAAUUUUGUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACAGGAUGAAAAUAAUACAAAAAGCAAAGCC .....................((((((((...........))((((.((..((((........((((....))))........))))...)).))))........))))))......... ( -12.89) >consensus UAAA___________AAAUACA_UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC______ ..........................................(((((((..((((........((((....))))........))))...)))))))....................... (-11.76 = -11.92 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:23 2006