Locus 6898

Sequence ID 2L_DroMel_CAF1
Location 19,263,002 – 19,263,121
Length 119
Max. P 0.828555
window10995

overview

Window 5

Location 19,263,002 – 19,263,121
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.28
Mean single sequence MFE -36.02
Consensus MFE -28.35
Energy contribution -27.66
Covariance contribution -0.69
Combinations/Pair 1.24
Mean z-score -3.02
Structure conservation index 0.79
SVM decision value 0.71
SVM RNA-class probability 0.828555
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19263002 119 - 22407834
AAUACGCUGAUAGUCGCCG-GCGAUAAAGCGCGAUUUAAUAUUCUGAUAAUUGUAGCACUCACAGCUACAAUUAUGCCAAACUUAAUCGAAUUGUCAGUUGGGCGGAUGGCGAAAAUGCU
.....((......(((((.-(((......)))........((((..(((((((((((.......)))))))))))(((.((((.............)))).))))))))))))....)). ( -34.12)
>DroSec_CAF1 4394 119 - 1
AAUACGCUGAUAGUCGCCG-GCGAUAAAGCGCGAUUUAAUAUUCUGAUAAUUGUAGCACUCACAGCUACAAUUAUGCCAAACUUAAUCGAAUUGUCAGUUGGGCGGCUGGCGAAAAUGCU
....((((...((((((((-(((((((....(((((..........(((((((((((.......))))))))))).........)))))..))))).))).)))))))))))........ ( -37.21)
>DroSim_CAF1 10175 119 - 1
AAUACGCUGAUAGUCGCCG-GCGAUAAAGCGCGAUUUAAUAUUCUGAUAAUUGUAGCACUCACAGCUACAAUUAUGCCAAACUUAAUCGAAUUGUCAGUUGGGCGGCUGGCGAAAAUGCU
....((((...((((((((-(((((((....(((((..........(((((((((((.......))))))))))).........)))))..))))).))).)))))))))))........ ( -37.21)
>DroEre_CAF1 11115 119 - 1
AAUACGCUGAUAGUCGCCG-GCGAUAAAGCGCGAUUUAAUCUUCUGAUAAUUGUAGCACUCACGGCUACAAUUAUGCCCAACUUAAUCGAAUUGUCAGUUGGGCGGAUGGCGAAAAUGCU
.....((......(((((.-(((......)))......((((....(((((((((((.......)))))))))))((((((((.............)))))))))))))))))....)). ( -40.72)
>DroYak_CAF1 10171 119 - 1
AAUACGCUGAUAGUCGCCA-GCGAUAAAGCGCGAUUUAAUAUUCUGAUAAUUGUAGCACUCACAGCUACAAUUAUGCCAAACUUAAUCGAAUUGUCAGUUUGGCGGAUGGCGAAAAUGCU
.....((......((((((-(((......)))..........(((.(((((((((((.......)))))))))))((((((((.............)))))))))))))))))....)). ( -38.92)
>DroAna_CAF1 25817 118 - 1
AAUACGCUGAUAGUUGGCGAAUGAUAAAACCCGAUUUAAUAUUCUGAUAAUUGCCCCACUCACUUCGCCAAUUGUGACAAACUUAAUCGAAUUGUCAAUUCCCAGAACGGCGAAAAU--U
....((((((((((((((((((((.......(((((............)))))......))).))))))))))))(((((...........)))))...........))))).....--. ( -27.92)
>consensus
AAUACGCUGAUAGUCGCCG_GCGAUAAAGCGCGAUUUAAUAUUCUGAUAAUUGUAGCACUCACAGCUACAAUUAUGCCAAACUUAAUCGAAUUGUCAGUUGGGCGGAUGGCGAAAAUGCU
....(((((....(((((..(((((((....(((((..........(((((((((((.......))))))))))).........)))))..))))).))..))))).)))))........ (-28.35 = -27.66 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:22 2006