Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,261,052 – 19,261,209 |
Length | 157 |
Max. P | 0.984927 |
Location | 19,261,052 – 19,261,169 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 97.45 |
Mean single sequence MFE | -26.16 |
Consensus MFE | -25.75 |
Energy contribution | -25.81 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -3.21 |
Structure conservation index | 0.98 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19261052 117 + 22407834 CCAACAUAUC-CCCACGAACGAUAAAUGCUCAACGCACUUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAA ..........-.....(((.((((..((((....((....))......(((......)))))))..)))).)))......(((((((((((...............))))))))))). ( -28.26) >DroSec_CAF1 2485 117 + 1 CCAACAUAUC-CCCACGAACGAUGAAUGCUCAACGCACUUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGACCAGAA ..........-.....(((.((((..((((....((....))......(((......)))))))..)))).)))......(((((.(((((...............))))).))))). ( -20.86) >DroSim_CAF1 8233 117 + 1 CCAACAUAUC-CCCACGAACGAUAAAUGCUCAACGCACUUGCUUUCCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAA ..........-.....(((.((((..((((....((....))......(((......)))))))..)))).)))......(((((((((((...............))))))))))). ( -28.26) >DroEre_CAF1 9198 118 + 1 CCAACAUAUCCCCCACGAACGAUAAAUGCCCAACGCACUUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACCCGAAAACAUUACUUGUGGGCCAGAA ................(((.((((..(((.....((....))......(((......))).)))..)))).)))......(((((((((((...............))))))))))). ( -27.26) >consensus CCAACAUAUC_CCCACGAACGAUAAAUGCUCAACGCACUUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAA ................(((.((((..(((.....((....))......(((......))).)))..)))).)))......(((((((((((...............))))))))))). (-25.75 = -25.81 + 0.06)
Location | 19,261,089 – 19,261,209 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.08 |
Mean single sequence MFE | -22.89 |
Consensus MFE | -18.32 |
Energy contribution | -20.76 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.80 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19261089 120 + 22407834 UUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAAUAAAGAGCAAACCGAACUGAAACCGCAUUUGCAUUACAUU ..........(((((((((........)))))..........(((((((((((...............))))))))))).....))))................((....))........ ( -27.06) >DroSec_CAF1 2522 120 + 1 UUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGACCAGAACAAAAAGCAAACCGAACUGAAACCGCAUUUGCAUUACAUU ((((((((..((((......).))).................(((((.(((((...............))))).)))))...))))))))..............((....))........ ( -19.86) >DroSim_CAF1 8270 120 + 1 UUGCUUUCCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAACAAAAAGCAAACCGAACUGAAACCGCAUUUGCAUUACAUU (((((((...((((......).))).................(((((((((((...............)))))))))))....)))))))..............((....))........ ( -26.06) >DroEre_CAF1 9236 120 + 1 UUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACCCGAAAACAUUACUUGUGGGCCAGAACAAAAAGCAAACCGAACUGAAACCGCAUUUGCAUUACAUU ((((((((..((((......).))).................(((((((((((...............)))))))))))...))))))))..............((....))........ ( -26.96) >DroYak_CAF1 8266 90 + 1 UUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCA------------------------------UUACUUGUGGGCCAGAACAAAAAGCAAACCGAACUGAAACCGCAUUUGCAAUACAUU ((((((((..(((......))).((.((((...------------------------------.....)))).)).......))))))))..............((....))........ ( -14.50) >consensus UUGCUUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAACAAAAAGCAAACCGAACUGAAACCGCAUUUGCAUUACAUU ((((((((..((((......).))).................(((((((((((...............)))))))))))...))))))))..............((....))........ (-18.32 = -20.76 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:20 2006