Locus 6895

Sequence ID 2L_DroMel_CAF1
Location 19,260,148 – 19,260,246
Length 98
Max. P 0.583972
window10991

overview

Window 1

Location 19,260,148 – 19,260,246
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.24
Mean single sequence MFE -24.23
Consensus MFE -14.48
Energy contribution -15.13
Covariance contribution 0.64
Combinations/Pair 1.26
Mean z-score -2.10
Structure conservation index 0.60
SVM decision value 0.10
SVM RNA-class probability 0.583972
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19260148 98 - 22407834
UUGUUACCAUUUGCCUCCUUUGACAUUUUCCCCAAGUAGUUGCCAUUUUUAUUGGCCACAUUUUUGGAAAAU-GCACAAUGUCAAACGGAACUGACU---G-----G
......(((.(((..((((((((((((((((..((((.((.((((.......)))).))))))..))))...-....))))))))).)))..))).)---)-----) ( -24.71)
>DroSec_CAF1 1571 103 - 1
UUGUUACCAUUUCCCUCCUUUGACAUUUUCCCCAAGCAGUUGCCAUUUUUAUUGGCCACAUUUUUGGGAAAU-GCGCAAUGUCAAACGGAACUGACU---GCACUCG
.(((...((.((((....((((((((((((((.(((..((.((((.......)))).))..))).)))))..-....))))))))).)))).))...---))).... ( -26.10)
>DroSim_CAF1 7308 103 - 1
UUGUUACCAUUUCCCUCCUUUGACAUUUUCCCCAAGCAGUUGCCAUUUUUAUUGGCCACAUUUUUGGGAAAU-GCGCAAUGUCAAACGGAACUGACU---GCACUCG
.(((...((.((((....((((((((((((((.(((..((.((((.......)))).))..))).)))))..-....))))))))).)))).))...---))).... ( -26.10)
>DroEre_CAF1 8259 103 - 1
UUGUUACCAUUUCCCUCCUUUGACAUUUUCUCCAAGCAGUUGCCAUUUUUAUUGGCCACAUUUUUGGGAAAU-GCACAAUGUCAAACGGAACUAACU---GCACUCG
...............(((((((((((((((.(((((..((.((((.......)))).))...))))))))..-....))))))))).))).......---....... ( -23.40)
>DroYak_CAF1 7353 103 - 1
UUGUUACCAUUUCCCUCUUUUGACGUUGUCUUCAAGCAGUUGCCAUUUUUAUUGGCCACAUUUUUGGGUAAU-GCACAAUGUCAAACGGAACUGACU---GCACUCG
.(((...((.((((....((((((((((((((((((..((.((((.......)))).))...))))))....-).))))))))))).)))).))...---))).... ( -24.50)
>DroAna_CAF1 16444 107 - 1
CUUUUGGCACUUUUAUUUUUUGUGCUUUUUACUUUCGGUUUGAAAUUUUUAUUGGCCACAUUUUUGUCAAAUCGAGCAAUGACAAAGGCUAAAGACAAGGACACUUG
((((((((((...........))))........((((((((((.........((....))......))))))))))......)))))).......((((....)))) ( -20.56)
>consensus
UUGUUACCAUUUCCCUCCUUUGACAUUUUCCCCAAGCAGUUGCCAUUUUUAUUGGCCACAUUUUUGGGAAAU_GCACAAUGUCAAACGGAACUGACU___GCACUCG
...............(((((((((((((((((......((.((((.......)))).))......))))).......))))))))).)))................. (-14.48 = -15.13 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:18 2006