Locus 6894

Sequence ID 2L_DroMel_CAF1
Location 19,258,428 – 19,258,543
Length 115
Max. P 0.962158
window10990

overview

Window 0

Location 19,258,428 – 19,258,543
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -30.98
Consensus MFE -24.68
Energy contribution -26.24
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -2.19
Structure conservation index 0.80
SVM decision value 1.54
SVM RNA-class probability 0.962158
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19258428 115 + 22407834
CCCCAAUCGAGCCA-----UGUUGGCCAUACAAUUUCCCAGCCUUUGCCACAUAAAUUCGCACACGAAAGAGUCUGACAAGGCUGUGCUAUUUAUGGAGCAUUUCCUGUUCAAGCAAAAA
........(.(((.-----....))))................(((((..(((((((..((((.(....)(((((....))))))))).)))))))(((((.....)))))..))))).. ( -29.80)
>DroSim_CAF1 5560 115 + 1
CCCCAAUCGAGCCA-----UGUUGGCCAUGCAAUUUCCCAGCCUUUGCCACAUAAAUUCGCACACGAAAGAGUCUGACAAAGCUGUGCUAUUUAUGGAGCAGUUCCUGUUCAACCAAAAA
........(.(((.-----....))))...........(((...((((..(((((((..((((.(....)((.((.....)))))))).)))))))..))))...)))............ ( -25.40)
>DroEre_CAF1 6590 115 + 1
CCCCGAUCGACCCA-----UGUUGGCCAUGCAAUUUCCUGGCCGUUGCCACAUAAAUUCGCACACGAAAGAGUCUGACAAGGCUGUGCUAUUUAUGUAGCAGUUCCUUCUCAACCAAAAA
....((..((....-----....(((((.(......).))))).((((.((((((((..((((.(....)(((((....))))))))).)))))))).)))).))..))........... ( -31.60)
>DroYak_CAF1 5733 115 + 1
CCCCGAUCGAGCCA-----UGUUGGCCAUGCAAUUUCCUGGCCUUUGCCACAUAAAUUCGCACACGAAAGAGCCUGACAAGGCUGUGCUAUUUAUGGAGCAGUUCCUGUUCAACCAAAAA
........((((..-----....(((((.(......).))))).((((..(((((((..((((.(....)(((((....))))))))).)))))))..)))).....))))......... ( -36.30)
>DroAna_CAF1 13607 120 + 1
CCCCAAUCGAGCUGGAGUCUUUUCCCCUUACAAUUUCCUGCCCAUUGCCACAUAAAUUCGCACACGAAAGAGCCUGACAUGGCUGUGCUAUUUAUGGAGCAGUUCCUGUUCAACCAAAAA
........((((.(((..............((......))...(((((..(((((((..((((.(....)((((......)))))))).)))))))..)))))))).))))......... ( -31.80)
>consensus
CCCCAAUCGAGCCA_____UGUUGGCCAUGCAAUUUCCUGGCCUUUGCCACAUAAAUUCGCACACGAAAGAGUCUGACAAGGCUGUGCUAUUUAUGGAGCAGUUCCUGUUCAACCAAAAA
........((((...........((((............))))..(((..(((((((..((((.(....)(((((....))))))))).)))))))..)))......))))......... (-24.68 = -26.24 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:17 2006