Locus 6892

Sequence ID 2L_DroMel_CAF1
Location 19,257,025 – 19,257,126
Length 101
Max. P 0.830829
window10987

overview

Window 7

Location 19,257,025 – 19,257,126
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 73.93
Mean single sequence MFE -28.87
Consensus MFE -17.57
Energy contribution -17.46
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.69
Structure conservation index 0.61
SVM decision value 0.71
SVM RNA-class probability 0.830829
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19257025 101 + 22407834
CCAAUUGGAUUACCUGGAUCGCCCGAAGACUUUGUGGGCCUACUGGGUCCUUUGGGUAUUUGACUGUCACCUCCUCCUUGAUUAUCCUUUCCAUGGGAUCU
......(((((.((((((..(((((((((((..(((....)))..))).))))))))....((..((((.........))))..))...)))).))))))) ( -27.30)
>DroSim_CAF1 4167 101 + 1
CCAGUUGGAUCACCUGGACCGCCCAAACGCUUUGGGUGUUUACUGGGGACCUUGGGUAUUUGACUGUCACCUCCUCCUUGAUUAUCCUUUCCAUGGGACCU
.((((..(((.(((..(..(((((((.....)))))))......(....).)..))))))..))))..................((((......))))... ( -28.10)
>DroEre_CAF1 5223 83 + 1
CCCAUUGGAUCACCUAGAUCGCCCAAAGGCUUACCGGGCUUACUGGGAUCUCUGGGUA------------------CUUGGUUAUCCUUUCCAUGGGACCU
(((((.(((..(((((((...((((.(((((.....)))))..))))...))))))).------------------...((....))..)))))))).... ( -31.20)
>consensus
CCAAUUGGAUCACCUGGAUCGCCCAAAGGCUUUGCGGGCUUACUGGGAACUUUGGGUAUUUGACUGUCACCUCCUCCUUGAUUAUCCUUUCCAUGGGACCU
((...((((...(((((...((((...........))))...)))))......(((((........................)))))..))))..)).... (-17.57 = -17.46 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:14 2006