| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,255,967 – 19,256,060 |
| Length | 93 |
| Max. P | 0.803209 |
| Location | 19,255,967 – 19,256,060 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 68.47 |
| Mean single sequence MFE | -28.11 |
| Consensus MFE | -13.41 |
| Energy contribution | -14.97 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19255967 93 - 22407834 CGCGAUUCUUCGA---------------------------UAUCCCCGUGGAUAUGGAGUUCGAUAAAACUAUCAAAAGAGGAACUAGGGUGGAAGAUUACGAAUUUCCAGCCCUAGAAA .....((((((.(---------------------------(((((....)))))).......((((....))))....))))))((((((((((((........)))))).))))))... ( -28.30) >DroSim_CAF1 3202 93 - 1 CGCGAUUCUUCGA---------------------------UAUCCCCGUGGAUGUGGAGUUCGAUAAAAAUAUCACAAGAGGAACUAAGCUGGAAGAUUACGAAUUUCCAGCUAUAGAAA .....((((((.(---------------------------(((((....)))))).......((((....))))....))))))((((((((((((........))))))))).)))... ( -25.70) >DroYak_CAF1 3192 120 - 1 CGCGAUUCUCCGAAAUGGAAAGACGUAAAACGCAACCGGAAAUCCCUUCGGAGUGGGAGCACGAAAGACCUAGCAAAAGAGGAACUUCGGUGGAUGAAUACGAGUUUCCAGCUUUAGAAA .....((((......((((((..((((.......((((((..((((((..(..((((....(....).)))).)..))).)))..)))))).......))))..)))))).....)))). ( -30.34) >consensus CGCGAUUCUUCGA___________________________UAUCCCCGUGGAUAUGGAGUUCGAUAAAACUAUCAAAAGAGGAACUAAGGUGGAAGAUUACGAAUUUCCAGCUAUAGAAA .....((((((.............................(((((....)))))........((((....))))....))))))(((((.((((((........)))))).)).)))... (-13.41 = -14.97 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:13 2006