Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,007,495 – 2,007,608 |
Length | 113 |
Max. P | 0.999831 |
Location | 2,007,495 – 2,007,608 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 97.34 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -26.36 |
Energy contribution | -26.12 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.39 |
Structure conservation index | 0.99 |
SVM decision value | 4.19 |
SVM RNA-class probability | 0.999831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2007495 113 - 22407834 GGCCAAAACGAAACCAAAAGCCGAUAUAGAAACAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAACCGACACACAUU-UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU ((((....(....(((((((((............((((((.............))))))........((((.......)-))))))))))))....).))))............ ( -26.12) >DroSec_CAF1 25114 112 - 1 GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUU-UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU ((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).)))...-...)))))))))....).))))............ ( -25.50) >DroSim_CAF1 21951 112 - 1 GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUU-UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU ((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).)))...-...)))))))))....).))))............ ( -25.50) >DroEre_CAF1 22007 112 - 1 GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUU-UGGGGCUUUUGGGGAAGGGGUUAGUAUGGAAAGU ((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).)))...-...)))))))))....).))))............ ( -27.90) >DroYak_CAF1 26426 113 - 1 GGCCAGAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUUUUGGGGCUUUUGGGGAAGGGGUUACUAUGGAAAGU ((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).))).......)))))))))....).))))............ ( -27.90) >consensus GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA_CGACACACAUU_UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU ((((....(....(((((((((............(((..(....)))).(((.((((...........)))).))).......)))))))))....).))))............ (-26.36 = -26.12 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:56 2006