Locus 6889

Sequence ID 2L_DroMel_CAF1
Location 19,254,056 – 19,254,162
Length 106
Max. P 0.702279
window10983

overview

Window 3

Location 19,254,056 – 19,254,162
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -32.95
Consensus MFE -19.99
Energy contribution -19.55
Covariance contribution -0.44
Combinations/Pair 1.13
Mean z-score -1.91
Structure conservation index 0.61
SVM decision value 0.35
SVM RNA-class probability 0.702279
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19254056 106 - 22407834
AGAAGGA--------------UGAGGACGGGGAGUAGGCUGGGGGAAAAGUCAAGGCUGCCUCAUGUGUCCUGGUGCUAAUGAAGCUCUGGUAGUCAGUAGGCUGCUUGUAAUGCGAAAA
...((.(--------------(.((((((.((((..((((..((......))..))))..))).).)))))).)).))......((.(.(((((((....))))))).)....))..... ( -33.00)
>DroSim_CAF1 1231 90 - 1
AGGAGGA--------------UGAGGACGGG----------------AAGUCAAGGCUGCCUCAUGUGUCCUGGUGCUAAUGAAGCUCUGGUAGUCAGUAGGCUGCUUGUAAUGCGAAAA
...((.(--------------(.((((((((----------------.(((....))).))).....))))).)).))......((.(.(((((((....))))))).)....))..... ( -25.90)
>DroEre_CAF1 2229 118 - 1
AGGCGGAGGUGGAGGAGCUUGAGGAGGUGG--AGCAGGUUGGGGAAAAAGUCAGGGCUGCCUCAUGUGUCCUGGUGCUAAUGAAGCUCUGGUAGUCACUAGGCUGCCUGUAAUGCGAAAA
((((((.(((((.(((((((.(.....(((--(.((((.(((((....(((....))).))))).....)))).).))).).))))))).....)))))...))))))............ ( -39.90)
>DroYak_CAF1 1244 103 - 1
GGAAGGA--------------AGAAGAUGG---GGAGGCUGGGGGAAAAGUCAAGGCUGCCUCAUGUGUCCUGGUGCUAAUGAAGCUCUGGUAGUCAGUAGGCUGCCUGUAAUGCGAAAA
...((((--------------...(.((((---((.((((..((......))..)))).)))))).).))))((.(((.....))).))(((((((....)))))))............. ( -33.00)
>consensus
AGAAGGA______________AGAAGACGG___G_AGGCUGGGGGAAAAGUCAAGGCUGCCUCAUGUGUCCUGGUGCUAAUGAAGCUCUGGUAGUCAGUAGGCUGCCUGUAAUGCGAAAA
.....................................................((((.((((..((....(..(.(((.....))).)..)....))..)))).))))............ (-19.99 = -19.55 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:11 2006