| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,253,290 – 19,253,385 |
| Length | 95 |
| Max. P | 0.789688 |
| Location | 19,253,290 – 19,253,385 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.14 |
| Mean single sequence MFE | -28.26 |
| Consensus MFE | -19.66 |
| Energy contribution | -20.66 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19253290 95 + 22407834 AUAUAUGGUAGUGCAUGCAAGAAUUUGCAGUAGUUUAAU-------------------------CAGACCGGCGGCUUAAACGGAAGUUUGUGGGCGGUGUGCCACACGGCGUAUGCGUA ............((((((.....................-------------------------.(.((((.(.((..((((....)))))).).)))).)(((....)))))))))... ( -28.20) >DroSim_CAF1 465 95 + 1 AUAUAUGGUAGUGCAUGCAAGAAUUUGCAGUAGUUUAAU-------------------------CAGACCGGCGGCUUAAACGGAAGUUUGUGGGCGGUGCGCCACAUGGCGUAUGCGUA .....(((((.(((.(((((....)))))))).)...))-------------------------)).((((.(.((..((((....)))))).).))))(((((....)))))....... ( -28.90) >DroEre_CAF1 1509 95 + 1 AUAUAUGGAAGUGCAUGCAAGAAUUUGCAGUAGUUUAAU-------------------------CAGACCGGCGGCUUAAACGGAAGUUUGUGGGCGGUGCGCCACACGGCGUAUGCGUA ...(((((((.(((.(((((....)))))))).)))...-------------------------...((((.(.((..((((....)))))).).))))(((((....)))))...)))) ( -30.40) >DroYak_CAF1 479 95 + 1 AUAUAUGGUAGUGCAUGCAGGAAUUUGCAGUAGUUUAAU-------------------------CAGACCGGCGGCUUAAACGGAAGUUUGUGGGCGGUUUGCCACACGGCGUAUGCGUA ............((((((.....................-------------------------.((((((.(.((..((((....)))))).).))))))(((....)))))))))... ( -29.70) >DroAna_CAF1 8835 116 + 1 AUUUAUAUAUAUCUGUGCAUAAAUAUAAUAUAGUAUGGUAUGGUAUGGGGGUGUACGAAUAUUUUGGACUGUAUGUAUAAUUAGAGUUGUGAGGGCG----ACCACCUGGCGUAUACGUA .(((((((....(((((((((.......))).))))))....))))))).((((((..........((((.((........)).))))((.(((...----....))).))))))))... ( -24.10) >consensus AUAUAUGGUAGUGCAUGCAAGAAUUUGCAGUAGUUUAAU_________________________CAGACCGGCGGCUUAAACGGAAGUUUGUGGGCGGUGCGCCACACGGCGUAUGCGUA ...........(((((((.................................................((((.(.((..((((....)))))).).))))..(((....)))))))))).. (-19.66 = -20.66 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:10 2006