Locus 6887

Sequence ID 2L_DroMel_CAF1
Location 19,252,194 – 19,252,304
Length 110
Max. P 0.539087
window10981

overview

Window 1

Location 19,252,194 – 19,252,304
Length 110
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 89.09
Mean single sequence MFE -13.70
Consensus MFE -9.44
Energy contribution -9.50
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.539087
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19252194 110 - 22407834
AGAGAUUUUAUAUUCGAUUUUUUCGAUUUUCAUUUCAUAUUUUCCUUUUAUAUCCAUUAGUCAUUCUUUAAGGGUAUAUGCGCUUAUCCUGCUCAACCCAA-AGA-CUUCUC
.((((........((((.....))))......................................(((((..((((...((.((.......)).))))))))-)))-..)))) ( -15.20)
>DroSec_CAF1 72115 111 - 1
ACAUAUUUUAUAUUCGAUUUUUUCGAUUUUCAUUUCAUGUUUUCCUUUCAUAUCCAUUAGUCAUUCUUCAAGGGUAUAUGCGCAUAUCCUGCUCAACUCAAAAAA-CUACUC
.............((((.....))))............(((((......((((((...((.....))....)))))).((.(((.....))).))......))))-)..... ( -11.70)
>DroSim_CAF1 73407 110 - 1
AGAGAUUUUAUAUUCGAUUU-UUCGAUAUUCAUUUCAUAUUUUCCUUUCAUAUCCAUUAGUCAUUCUUCAAGGGUAUAUGCGCAUAUCCUGCUCAACCCAAAAAA-CUACUC
.(((((...((((.(((...-.)))))))..)))))...................................((((...((.(((.....))).))))))......-...... ( -15.50)
>DroYak_CAF1 73583 106 - 1
UGAGAUUUUAUAUUCGAUUUUUUCGA------UUUCAUAUUUUCCUUUCAUAUCCAUUACUCAUUCUUUAAGGGUAUAUGCGCAUAUCCUGCUCACCCCAAAAAACCUUUUU
((((.........((((.....))))------......................................(((((((......))))))).))))................. ( -12.40)
>consensus
AGAGAUUUUAUAUUCGAUUUUUUCGAUUUUCAUUUCAUAUUUUCCUUUCAUAUCCAUUAGUCAUUCUUCAAGGGUAUAUGCGCAUAUCCUGCUCAACCCAAAAAA_CUACUC
.............((((.....)))).............................................((((...((.((.......)).))))))............. ( -9.44 =  -9.50 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:09 2006