| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,249,826 – 19,249,919 |
| Length | 93 |
| Max. P | 0.754615 |
| Location | 19,249,826 – 19,249,919 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -13.60 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19249826 93 + 22407834 CAGCUUCAAUUUGCCACAAAAACACAUUGGCAACAUUUUAAUGAAUGUUGCAGCCGCCGCUGCCGCUGCCG-C-------AGACAAACAAUGGGAAAAGGG ..((........))..........((((((((((((((....))))))))).((.((.((....)).)).)-)-------.......)))))......... ( -24.00) >DroVir_CAF1 82099 88 + 1 CAGCUUCAAUUUGCCACAAAAACACAUUGGCAACAUUUUAAUGAAUGUUGCAUCAGGCGC------AGC----UCCG-AAAGACAAACAAUGAA--ACGGU ..(.((((....(((.(((.......)))(((((((((....)))))))))....)))..------...----..(.-...)........))))--.)... ( -19.00) >DroGri_CAF1 85361 93 + 1 CAGCUUCAAUUUGCCACAAAAACACAUUGGCAACAUUUUAAUGAAUGUUGCAUCAGGCGC------AGGAGGCACCAAAAAAGCAAACAAUGAA--AAAGC ..(((((....((((.(((.......)))(((((((((....)))))))))....)))).------..))))).....................--..... ( -23.60) >DroEre_CAF1 68847 87 + 1 CAGCUUCAAUUUGCCACAAAAACACAUUGGCAACAUUUUAAUGAAUGUUGCAGCCGCCGC------UGCCG-C-------AGACAAACAAUGGGAAAAGGG ..((........))..........((((((((((((((....))))))))).((.((...------.)).)-)-------.......)))))......... ( -20.40) >DroYak_CAF1 71220 87 + 1 CAGCUUCAAUUUGCCACAAAAACACAUUGGCAACAUUUUAAUGAAUGUUGCAGCCGCCGC------UGCCG-C-------AGACAAACAAUGGGAAAAGGG ..((........))..........((((((((((((((....))))))))).((.((...------.)).)-)-------.......)))))......... ( -20.40) >DroMoj_CAF1 103113 88 + 1 CAGCUUCAAUUUGCCACAAAAACUCAUUGGCAACAUUUUAAUGAAUGUUGCAUCAGGCGC------AGC----UUGG-CAAAGCAAACAAUAAA--AUAGC ..((((.....((((..............(((((((((....)))))))))...((((..------.))----))))-))))))..........--..... ( -21.00) >consensus CAGCUUCAAUUUGCCACAAAAACACAUUGGCAACAUUUUAAUGAAUGUUGCAGCAGCCGC______AGCCG_C_______AGACAAACAAUGAA__AAGGG ..((........))..........((((((((((((((....))))))))).......((.......))..................)))))......... (-13.60 = -13.93 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:08 2006