| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,248,081 – 19,248,180 |
| Length | 99 |
| Max. P | 0.526192 |
| Location | 19,248,081 – 19,248,180 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 96.06 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -26.52 |
| Energy contribution | -26.16 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.92 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19248081 99 + 22407834 AUAUCGAAAUCGAUACGAUUCGUUACACUUAGCGAAGGUUGGAGCUCUUUGGGGGUUGUUCAUUGGAUUUCGCUGAGAGGUGCGAAACAAGCCCAAAGU .(((((....))))).(.(((((..(.((((((((((..((((((((.....))))..)))).....)))))))))).)..))))).)........... ( -27.90) >DroSec_CAF1 67990 99 + 1 AUAUCGAAAUCGAUACGAUUCGUUACACUUAGCGAAGGUUGGAGCUCUUUGGGGGUUGUUCAUUGGAUUUCGCUGAGAGGUGCGAAGCAAGCCCAAAGU .(((((....))))).(.(((((..(.((((((((((..((((((((.....))))..)))).....)))))))))).)..))))).)........... ( -27.90) >DroSim_CAF1 69329 99 + 1 AUAUCGAAAUCGAUACGAUUCGUUACACUUAGCGAAGGUUGGAGCUCUUUGGGGGUUGUUCAGUGGAUUUCGCUGAGAGGUGCGAACCAAGCCCAAAGU .(((((....)))))((((((((((....))))))..)))).....(((((((.....(((((((.....))))))).(((....)))...))))))). ( -30.50) >DroEre_CAF1 67193 98 + 1 AUAUCGAAAUCGAUGCGAUUCGUUACACUUGGCGAAGGUUGGAGCUCUUUGG-GGUUGUUCGUUGGAUUUCGCUGAGAGGUGCGAAACAAACCCAAAGU .(((((....)))))((((((((((....))))))..)))).....((((((-(.(((((..(((.(((((.....))))).)))))))).))))))). ( -28.60) >DroYak_CAF1 69417 99 + 1 AUAUCGAAAUCGAUACGAUUCGUUACACUUGGCGAAGGUUGGAGCUCUUUGGGGGUUGUUCAUUGGGUUUCGCUGAGAGGUGCGAAACAAACCCAAAGU .(((((....)))))((((((((((....))))))..)))).....(((((((((....)).....(((((((........)))))))...))))))). ( -29.00) >consensus AUAUCGAAAUCGAUACGAUUCGUUACACUUAGCGAAGGUUGGAGCUCUUUGGGGGUUGUUCAUUGGAUUUCGCUGAGAGGUGCGAAACAAGCCCAAAGU .(((((....))))).(.(((((..(.((((((((((..((((((((.....))))..)))).....)))))))))).)..))))).)........... (-26.52 = -26.16 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:03 2006