Locus 6881

Sequence ID 2L_DroMel_CAF1
Location 19,246,283 – 19,246,389
Length 106
Max. P 0.692104
window10970

overview

Window 0

Location 19,246,283 – 19,246,389
Length 106
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 80.63
Mean single sequence MFE -22.35
Consensus MFE -11.51
Energy contribution -10.82
Covariance contribution -0.69
Combinations/Pair 1.32
Mean z-score -2.47
Structure conservation index 0.52
SVM decision value 0.33
SVM RNA-class probability 0.692104
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19246283 106 + 22407834
UUAAGCUUCAUAACUACGAACUUAUU--------GUA---UCCCAUUUGCAGUAAUUAUUCUUUACAAGCAAGACAACUGUAUUGGAUAUUAAAUAUCCCCAAAUCGGGGUACUUAC
.((((.(((........)))))))..--------(((---((((.(((((.((((.......))))..)))))...........((((((...)))))).......))))))).... ( -22.40)
>DroSec_CAF1 66164 105 + 1
UUAAGCUUCAUAACUACGAUCUUAUU--------GUA---UCCCAUUUGCAGUAAUUACACUUUACAAGCAAGAU-ACUUUAGUGGGUAUUAAAUAUCCCCAAGUCGGGGUACUUAC
.((((..((........)).))))..--------(((---((((.(((((.((((.......))))..)))))..-.......((((.((.....)).))))....))))))).... ( -21.60)
>DroSim_CAF1 67513 105 + 1
UUAAGCUUCAUAGCUACGAUCUUAUU--------UUA---CCCCAUCUGCAGUAAUUACACUUUACAAGCAAGAU-ACUUUAUUGGGUAUUAAAUAUCCCCAAAUCGGGGUACUUAC
...((((....))))...........--------.((---((((((((((.((((.......))))..)).))))-......(((((.((.....)).)))))...))))))..... ( -24.70)
>DroYak_CAF1 67627 115 + 1
UUAAGCUUCAUACCUACGAACUGAUGGGCUUAGCUUACCAUCCUAUUUGUAGUAAUUAUUAUUUACAAUCAAGAC-GCUCUAACGGAUAUCAAAUAUCCUUAAAU-GGUAUACUUAU
.((((........(((((((..(((((..........)))))...)))))))....(((((((((......((..-...))...((((((...)))))).)))))-))))..)))). ( -20.70)
>consensus
UUAAGCUUCAUAACUACGAACUUAUU________GUA___UCCCAUUUGCAGUAAUUACACUUUACAAGCAAGAC_ACUUUAUUGGAUAUUAAAUAUCCCCAAAUCGGGGUACUUAC
........................................(((((((((..((((.......))))..................((((((...)))))).))))).))))....... (-11.51 = -10.82 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:59 2006