Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,004,799 – 2,004,889 |
Length | 90 |
Max. P | 0.599360 |
Location | 2,004,799 – 2,004,889 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.04 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -16.99 |
Energy contribution | -17.35 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.18 |
Mean z-score | -1.53 |
Structure conservation index | 0.63 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2004799 90 - 22407834 UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGCU----AACGUCGAAGGA--------------ACCUACAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCAC ...--..((.(..(.----..((((((.((.(((.....)))----......(((((.--------------........)))))..........)).))))))...)..).)) ( -24.00) >DroSec_CAF1 22418 90 - 1 UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUU----AGCGUCGAAGGA--------------ACCUUCAACCUUCACCCAAAUUAGCCCACGGCCAUGUGCCAC ...--..((.(..(.----..(((.((.((..(((((.....----))))).(((((.--------------........)))))..........)).)).)))...)..).)) ( -23.70) >DroSim_CAF1 19254 90 - 1 UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUU----AGCGUCGAAGGA--------------ACCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCAC ...--..((.(..(.----..((((((.((..(((((.....----))))).(((((.--------------........)))))..........)).))))))...)..).)) ( -28.00) >DroEre_CAF1 19249 97 - 1 UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUC----AGCGUCGGAGGAGCC-------UUCAGCCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCUC ...--.....(..(.----..((((((.((..(((((.....----)))))..((((.((.-------....)))))).................)).))))))...)..)... ( -26.70) >DroYak_CAF1 23625 104 - 1 UUU--GAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUC----AGCGUCGAAGGAAGAAGGGAAAAGGAACCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCUC ...--(((..(..(.----..((((((.((..(((((.....----))))).(((((..(((((.........)))))..)))))..........)).))))))...)..)))) ( -37.20) >DroAna_CAF1 18681 93 - 1 CUUAUGAGUGAUACUGAGCAAGCGAUGCGUAAGGGCUUUGUGAAUAAGUGUCAGAGGA--------------A-------CCUUCACCCAAAUUAGCCCAUGGCCAUGUGGCCC ...(((.((((((((......((((.((......)).)))).....)))))).((((.--------------.-------.))))..........)).)))((((....)))). ( -22.20) >consensus UUU__AAGUAGUGCU____AAGCCAUGUGCAAGCGCUUUGUU____AGCGUCGAAGGA______________ACCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCAC ..........((((.......((((((.((..(((((.........))))).(((((.......................)))))..........)).))))))...))))... (-16.99 = -17.35 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:55 2006