Locus 688

Sequence ID 2L_DroMel_CAF1
Location 2,004,799 – 2,004,889
Length 90
Max. P 0.599360
window1124

overview

Window 4

Location 2,004,799 – 2,004,889
Length 90
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 80.04
Mean single sequence MFE -26.97
Consensus MFE -16.99
Energy contribution -17.35
Covariance contribution 0.36
Combinations/Pair 1.18
Mean z-score -1.53
Structure conservation index 0.63
SVM decision value 0.13
SVM RNA-class probability 0.599360
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2004799 90 - 22407834
UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGCU----AACGUCGAAGGA--------------ACCUACAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCAC
...--..((.(..(.----..((((((.((.(((.....)))----......(((((.--------------........)))))..........)).))))))...)..).)) ( -24.00)
>DroSec_CAF1 22418 90 - 1
UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUU----AGCGUCGAAGGA--------------ACCUUCAACCUUCACCCAAAUUAGCCCACGGCCAUGUGCCAC
...--..((.(..(.----..(((.((.((..(((((.....----))))).(((((.--------------........)))))..........)).)).)))...)..).)) ( -23.70)
>DroSim_CAF1 19254 90 - 1
UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUU----AGCGUCGAAGGA--------------ACCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCAC
...--..((.(..(.----..((((((.((..(((((.....----))))).(((((.--------------........)))))..........)).))))))...)..).)) ( -28.00)
>DroEre_CAF1 19249 97 - 1
UUU--AAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUC----AGCGUCGGAGGAGCC-------UUCAGCCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCUC
...--.....(..(.----..((((((.((..(((((.....----)))))..((((.((.-------....)))))).................)).))))))...)..)... ( -26.70)
>DroYak_CAF1 23625 104 - 1
UUU--GAGUAGUGCU----AAGCCAUGUGCAAGCGCUUUGUC----AGCGUCGAAGGAAGAAGGGAAAAGGAACCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCUC
...--(((..(..(.----..((((((.((..(((((.....----))))).(((((..(((((.........)))))..)))))..........)).))))))...)..)))) ( -37.20)
>DroAna_CAF1 18681 93 - 1
CUUAUGAGUGAUACUGAGCAAGCGAUGCGUAAGGGCUUUGUGAAUAAGUGUCAGAGGA--------------A-------CCUUCACCCAAAUUAGCCCAUGGCCAUGUGGCCC
...(((.((((((((......((((.((......)).)))).....)))))).((((.--------------.-------.))))..........)).)))((((....)))). ( -22.20)
>consensus
UUU__AAGUAGUGCU____AAGCCAUGUGCAAGCGCUUUGUU____AGCGUCGAAGGA______________ACCUUCAACCUUCACCCAAAUUAGCCCAUGGCCAUGUGCCAC
..........((((.......((((((.((..(((((.........))))).(((((.......................)))))..........)).))))))...))))... (-16.99 = -17.35 +   0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:55 2006