| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,232,892 – 19,232,990 |
| Length | 98 |
| Max. P | 0.641205 |
| Location | 19,232,892 – 19,232,990 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.37 |
| Mean single sequence MFE | -15.64 |
| Consensus MFE | -11.51 |
| Energy contribution | -12.07 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19232892 98 - 22407834 CCAC---CAUCCCACAGUUGGGUAAUUUUUCCCUAUUUUGUUCAGCACUUUCACUUGGCUUCACCGCACUUCGACUUCUUUCCCAGCUGCCAUCGCUUUUC--- ....---.......((((((((.......((........((..(((.(........))))..))........)).......))))))))............--- ( -14.23) >DroSec_CAF1 52739 104 - 1 CCACCACCACCCCGCAGUUGGGUAAUUUUUCCCUAUUUUGUUCAGCACUUUCACUUGGCUUCACCGCACUUCGACUUCUUUCCCAGCUGCCUACGCUUUUCCUC .............(((((((((.......((........((..(((.(........))))..))........)).......))))))))).............. ( -17.83) >DroSim_CAF1 54504 104 - 1 CCACCACCACCCCGCAGUUGGGUAAUUUUUCCCUAUUUUGUUCAGAACUUUCACUUGGCUUCACCGCACUUCGACUUCUUUCCCAGCUGCCUGCGCUUUUCCUC .............(((((((((......................((....)).....((......))..............))))))))).............. ( -16.70) >DroEre_CAF1 51911 104 - 1 GAACCACCACCCCGCAGUUGGGUAAUUUUUCCCUAUUUUGUUCAGCACUUUCACUUGGCUUCACCGCAUUUCGACUUCUUUCCCAGCUGCCUUCGCUUUUCCUC .............(((((((((.......((........((..(((.(........))))..))........)).......))))))))).............. ( -17.83) >DroWil_CAF1 162065 85 - 1 ---CAACCCCCUCACAGUUGGGUAAUUUUUCUCUAUUUUGUGCAGCACUUUCACUUGGCUUCAUCGUGUUUG-----CUUU--UAGCUUC---------AAUUU ---.....(((........)))...............(((.((((((....(((.((....))..)))..))-----))..--..))..)---------))... ( -9.40) >DroYak_CAF1 54385 100 - 1 ----CACCACCCCGCAGUUGGGUAAUUUUUCCCUAUUUUGUUCAGCACUUUCACUUGGCUUCACCGCAUUUCGACUUCUUUCCCAGCUGCCUUCGCUAUUCCUC ----.........(((((((((.......((........((..(((.(........))))..))........)).......))))))))).............. ( -17.83) >consensus CCACCACCACCCCGCAGUUGGGUAAUUUUUCCCUAUUUUGUUCAGCACUUUCACUUGGCUUCACCGCACUUCGACUUCUUUCCCAGCUGCCUUCGCUUUUCCUC .............(((((((((.........................(........)((......))..............))))))))).............. (-11.51 = -12.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:48 2006