| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,229,465 – 19,229,556 |
| Length | 91 |
| Max. P | 0.623819 |
| Location | 19,229,465 – 19,229,556 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 81.92 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -13.61 |
| Energy contribution | -14.17 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19229465 91 - 22407834 UCUGGUAAAAUCAAAUCUAUUGUCAUCUUGCCAGCUUCGUCGUAGUGUUUAUCCAUACACUGCAU-GAAAAUAUUGGUUUGC-----------UUUUCGUUUC---- .(((((((...(((.....))).....))))))).(((((.(((((((........)))))))))-))).............-----------..........---- ( -18.90) >DroSec_CAF1 49313 91 - 1 UCUGGUAAAAUCAAAUCUAUUGUCAUCUUGCCAGCUUCGCCGUAGUGUUUAUCCAUACACUGCAC-GAAAAUGUUGGUUUGC-----------UUUAUGGUUC---- .............((((((..(.((....((((((((((..(((((((........))))))).)-)))...)))))).)))-----------..)).)))).---- ( -20.20) >DroSim_CAF1 51059 91 - 1 UCUGGUAAAAUCAAAUCUAUUGUCAUCUUGCCAGCUUCGUCGUAGUGUUUAUCCAUACACUGCAC-GAAAAUAUUGGUUUGC-----------UUUAUGGUUC---- .(((((((...(((.....))).....))))))).(((((.(((((((........)))))))))-))).............-----------..........---- ( -20.70) >DroEre_CAF1 48716 92 - 1 UCUGGUAAAAUCAAAUCUAUUGUCAUCUUGCCAGCUUCGGCGUAGUGUUUAUCCAUGCACUGCACCAAAAAUAUUGGCUUGA-----------UUUGCGGAUC---- ((((...(((((((...............((((((....))(((((((........)))))))...........))))))))-----------))).))))..---- ( -24.96) >DroYak_CAF1 50942 96 - 1 UCUGGUAAAAUCAAAUCUAUUGUCAUCUUGCCAGCUUCGUCGUAGUGUUUAUCCAUACACUGCCCCGAAAAUAUUGGUUUGG-----------UUUAUGGAUCACAC .(((((((...(((.....))).....)))))))..........((((..(((((((.((((..((((.....))))..)))-----------).))))))).)))) ( -23.50) >DroAna_CAF1 97885 97 - 1 GCUGGUAAAAUCAAAUCUAUUGUCACUUUGCCAGCUUCAUCGUUGUGUUUGUUAA--CACUU-AA-GAAAAAGUUGUU--GCAGAACAAAAAAUAAAUGGUUA---- (((((((((..(((.....)))....)))))))))...((((((.(((((..(((--(((((-..-....))).))))--)..))))).......))))))..---- ( -20.90) >consensus UCUGGUAAAAUCAAAUCUAUUGUCAUCUUGCCAGCUUCGUCGUAGUGUUUAUCCAUACACUGCAC_GAAAAUAUUGGUUUGC___________UUUAUGGUUC____ .(((((((...(((.....))).....))))))).......(((((((........)))))))............................................ (-13.61 = -14.17 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:45 2006