Locus 6871

Sequence ID 2L_DroMel_CAF1
Location 19,227,218 – 19,227,309
Length 91
Max. P 0.868146
window10951

overview

Window 1

Location 19,227,218 – 19,227,309
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 72.18
Mean single sequence MFE -26.60
Consensus MFE -10.98
Energy contribution -11.59
Covariance contribution 0.61
Combinations/Pair 1.24
Mean z-score -2.06
Structure conservation index 0.41
SVM decision value 0.86
SVM RNA-class probability 0.868146
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19227218 91 - 22407834
UCAAGUCGAUCAAUCAUUUGAUUGACGCCACACAGCGCCGUGUGAAGGAUAUG---GAUGUGUGUGUGAGUGUAUGUGUGUGUUGGCUUCCGUG
..(((((((((((((....)))))(((((((((((((((((((.....)))))---).))).)))))).))))........))))))))..... ( -30.00)
>DroPse_CAF1 52791 84 - 1
ACAAGUCGAUCAAUCAUUUGAUUGACGCCACAUUGCGCAGCAUGAAGGAUAUG---GAUGUGAGCGUGGAUGGU-GAAUGGUAAAU------GG
....(((((((((....)))))))))((((..(..(((.((((..(.....).---.))))..)))..).))))-...........------.. ( -24.00)
>DroEre_CAF1 46600 79 - 1
UCAAGUCGAUCAAUCAUUUGAUUGACGCCACACAGCGCCGUGUGAAGGAUAUG---GAUG------UGUGUGUUACCAUGGGCGGG------UG
....(((((((((....)))))))))((((((((...((((((.....)))))---).))------)))).))((((.......))------)) ( -27.90)
>DroYak_CAF1 48745 85 - 1
UCAAGUCGAUCAAUCAUUUGACUGACGCCACACAGCGCCGUGUGAAGAUUGUG---CAUGUGUGUGUGUGUGUUUUCGUGGGAGGA------UG
...((((((........)))))).((((((((((((((.((......)).)))---).)))))).))))..((((((....)))))------). ( -26.10)
>DroMoj_CAF1 69296 84 - 1
UCGAGU-GAUCAAUCAUUUGAUUGACGCCGCUUUGCUCAGCAUGAAUGAUGUGCUAUUUGUGUGGGUGCCUGUUUGCACG---GGC------UU
.((.((-(.((((((....)))))))))))....(((((.((..((((......))))..)))))))((((((....)))---)))------.. ( -27.60)
>DroPer_CAF1 55801 84 - 1
ACAAGUCGAUCAAUCAUUUGAUUGACGCCACAUUGCGCAGCAUGAAGGAUAUG---GAUGUGAGCGUGGAUGGU-GAAUGGUAAAU------GG
....(((((((((....)))))))))((((..(..(((.((((..(.....).---.))))..)))..).))))-...........------.. ( -24.00)
>consensus
UCAAGUCGAUCAAUCAUUUGAUUGACGCCACACAGCGCAGCAUGAAGGAUAUG___GAUGUGUGCGUGGGUGUUUGCAUGGGAGGG______UG
....(((((((((....)))))))))....((((((((.........................)))).))))...................... (-10.98 = -11.59 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:43 2006