Locus 6870

Sequence ID 2L_DroMel_CAF1
Location 19,222,803 – 19,222,904
Length 101
Max. P 0.599612
window10950

overview

Window 0

Location 19,222,803 – 19,222,904
Length 101
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 84.08
Mean single sequence MFE -30.85
Consensus MFE -21.18
Energy contribution -22.18
Covariance contribution 1.00
Combinations/Pair 1.18
Mean z-score -2.33
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.599612
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19222803 101 - 22407834
GACCAAGUCGCUCCAAUAUCGCUCACGUGGAG------ACCCUGAGAUGUACUUCGCAAUGUGCAGAUAACGUGUGCACAUUGCCAUGCCCAUUAUCGGCGACAUCA
......((((((.........((((.(.(...------.)).))))(((..(...((((((((((.((...)).))))))))))...)..)))....)))))).... ( -32.70)
>DroVir_CAF1 54211 107 - 1
AAUUGAAACGAACCCAAAUCAAACACUCACAUACCCGUAUCCAUAUAAGUACUCACAAAUGUGCAUAUAACGUGUGCACAUUGCCAUGGCCAUUAUCGGCAACAUCA
.........((..................(((....((((........)))).....(((((((((((...)))))))))))...)))(((......)))....)). ( -18.80)
>DroSec_CAF1 42680 101 - 1
GACCAAGUCGCUCCAAUAUUGCUCACGUGGAG------ACCCUGAGAUGUACUUCGCAAUGUGCAGAUAACGUGUGCACAUUGCCAUGCCCAUUAUCGGCGACAUCA
......((((((.........((((.(.(...------.)).))))(((..(...((((((((((.((...)).))))))))))...)..)))....)))))).... ( -32.70)
>DroSim_CAF1 44438 101 - 1
GACCAAGUCGCUCCAAUAUCGCUCACGUGGAG------ACCCUGAGAUGUACUUCGCAAUGUGCAGAUAACGUGUGCACAUUGCCAUGCCCAUUAUCGGCGACAUCA
......((((((.........((((.(.(...------.)).))))(((..(...((((((((((.((...)).))))))))))...)..)))....)))))).... ( -32.70)
>DroEre_CAF1 42295 101 - 1
GGCCAAGUCGUCCUCACAUCGCUCACGUGGAG------ACCCUGCGAAGUACUCCGCAAUGUGCAGAUAACGUGUGCACAUUGCCUUGCCCAUUAUCGGCGACAUCA
......((((((...((.((((....(.(...------.))..)))).)).....((((((((((.((...)).)))))))))).............)))))).... ( -32.30)
>DroYak_CAF1 44252 101 - 1
GGCCAAGUCGCCCUCAUAUCGCUCACGUGGAA------ACUCUGAGAAGUACUCCGCAAUGUGCAGAUAACGUGUGCACAUUGCCAUGCCCAUUAUCGGCGACAUCA
......((((((....(((..((((.(.(...------.).)))))..)))....((((((((((.((...)).)))))))))).............)))))).... ( -35.90)
>consensus
GACCAAGUCGCUCCAAUAUCGCUCACGUGGAG______ACCCUGAGAAGUACUCCGCAAUGUGCAGAUAACGUGUGCACAUUGCCAUGCCCAUUAUCGGCGACAUCA
......((((((......((((....)))).........................((((((((((.((...)).)))))))))).............)))))).... (-21.18 = -22.18 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:42 2006