Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,002,343 – 2,002,435 |
Length | 92 |
Max. P | 0.960917 |
Location | 2,002,343 – 2,002,435 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -20.14 |
Consensus MFE | -13.66 |
Energy contribution | -13.70 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.08 |
Mean z-score | -2.49 |
Structure conservation index | 0.68 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2002343 92 - 22407834 UUAAACUGCAUAUAUGAUUAGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUUACCAG--- ......(((((...((((..((((((((((....))))))))))..))))(((.....))))))))............(((........)))--- ( -19.00) >DroSec_CAF1 19939 92 - 1 UUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUCUGCACUUGAAAUUGACCUGAAACUUACCAC--- ..........(((.((((..((((((((((....))))))))))..)))).))).(((.(((.......)))...)))..............--- ( -18.70) >DroSim_CAF1 16777 92 - 1 UUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUACUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUCACCAC--- ......(((((((.((((..((((((((((....))))))))))..)))).)))........))))..((((.((......)).))))....--- ( -22.70) >DroEre_CAF1 16899 95 - 1 UUAAGCAGCAACUAUGAUUCGAAGUAGUGAACUCCCACUAUUUCCCAUCCAGCCAGUGGCCCAGUACCUGUGAUUGACCUGAAACUCACCAUGGA ...........(((((....(((((((((......))))))))).....(((.((((.((.........)).))))..)))........))))). ( -19.70) >DroYak_CAF1 21325 83 - 1 UUAAGC-GCAACUAUGAUUCGAAGUAGUGAACUCCCACUAUUUCCGAUCAAAG--------GAGUACUUCUGAUUGACCUCAAACUCACCAC--- ..(((.-.(..((.(((((.(((((((((......))))))))).))))).))--------..)..))).((((((....)))..)))....--- ( -20.60) >consensus UUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUCACCAC___ ..............((((..(((((((((......)))))))))..))))............................................. (-13.66 = -13.70 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006