Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,216,614 – 19,216,708 |
Length | 94 |
Max. P | 0.509324 |
Location | 19,216,614 – 19,216,708 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 90.28 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -20.39 |
Energy contribution | -19.95 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.25 |
Mean z-score | -2.34 |
Structure conservation index | 0.78 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509324 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19216614 94 - 22407834 CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCGUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU ..(((((((((((((((((((..((((.((........))))))...)))))..((..(((((...)))))...)))))))))))))))).... ( -26.70) >DroSec_CAF1 36549 92 - 1 CAAGUAUGUGCUUAUCCUGCUU--AAGACUUCGUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU ..(((((((((((((((..(((--((((....((((...(((.....)))..))))....))))))).......).)))))))))))))).... ( -25.60) >DroSim_CAF1 38330 94 - 1 CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCGUGAAUGGCUUUAAUGGCAUUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU ..((((((((((((((..((..(((((.....(((((((.(......).)))))))....)))))((.....)))))))))))))))))).... ( -27.40) >DroEre_CAF1 36268 94 - 1 CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCAUGAAUGGCUUUAAUGGCAGUCGCCUCUUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU ..(((((((((((((((((((..((((.((........))))))...)))))((.((.......))))........)))))))))))))).... ( -26.30) >DroYak_CAF1 37942 94 - 1 CAAGUAUGUGCUUAUCCUGCUUCCAAGACUUCAUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCGUGUAUUAUGU ..((((..((((((((..((((((((((.....(((...(((.....)))..))).....))))))))......))))))))))..)))).... ( -25.00) >DroAna_CAF1 85433 94 - 1 CAAGUAUGUGCUUAUCCCACUUUAACAAUUUCAUGCUUGGCCCAAAUGGAAGGCGUUUUAUUUUGGAAAUGGCUGCGAUAAGCAUGUAUUAUGG ..(((((((((((((((((.(((...(((...((((((..((.....)).))))))...)))...))).)))....)))))))))))))).... ( -25.10) >consensus CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCAUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU ..((((..((((((((..................((...(((.....)))..))((..(((((...)))))...))))))))))..)))).... (-20.39 = -19.95 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:39 2006