Locus 6866

Sequence ID 2L_DroMel_CAF1
Location 19,210,172 – 19,210,282
Length 110
Max. P 0.934857
window10946

overview

Window 6

Location 19,210,172 – 19,210,282
Length 110
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 96.24
Mean single sequence MFE -38.70
Consensus MFE -33.58
Energy contribution -33.98
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.87
SVM decision value 1.24
SVM RNA-class probability 0.934857
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19210172 110 + 22407834
CUGCCACAGCCUCUGGAUUUUUGGCUUCAACUUCAGCUUCGGU----UUUAGCUCUGGCUUUUGGCCGACUGCAGUUGCACAAUUUGCCGGCUGGGGGUUCCGUUUUUGGGGCA
...((.(((((...((....(((....(((((.(((..(((((----(..(((....)))...))))))))).)))))..)))....))))))).))((((((....)))))). ( -39.30)
>DroSec_CAF1 30208 110 + 1
CUGCCACAGCCUCUGGAUUUUUGGCUUCAACUUCAGCUUCGGU----UUUAGCUCUGGCUUUUGGACGACUGCAGUUGCACAAUUUGCCGGCUGGGGGUUCCGUUUUUGGGGCA
..(((..((((((..(......((((..((((........)))----)..))))(((((..(((..((((....))))..)))...))))))..))))))(((....)))))). ( -37.00)
>DroSim_CAF1 31711 110 + 1
CUGCCACAGCCUCUGGAUUUUUGGCUUCAACUUCAGCUUCGGU----UUUAGCUCUGGCUUUUGGCCGACUGCAGUUGCACAAUUUGCCGGCUGGGGGUUCCGUUUUUGGGGCA
...((.(((((...((....(((....(((((.(((..(((((----(..(((....)))...))))))))).)))))..)))....))))))).))((((((....)))))). ( -39.30)
>DroEre_CAF1 29962 110 + 1
CAGCCACAGCCUCUGGAUUUUUGGCUUCAACUUCAGCUUCGGU----UUUAGCACUGCCUUUUGGCCGACUGCAGUUGCACAAUUUGCCGGCUGGGGGUUCCGUUUUUGGGGCA
...((.(((((...((....(((....(((((.(((..(((((----(..((......))...))))))))).)))))..)))....))))))).))((((((....)))))). ( -35.00)
>DroYak_CAF1 31336 114 + 1
CUGCCCCAGCCUCUGGAUUUUUGGCUUCAACUUCAGCUUCGGUUCGGUUUAGCACUGGCUUUUGGCCGACUGCAGUUGCACAAUUUGCCGGCUGGGGGUUCCGUUUUUGGGCCA
...((((((((...........(((........(((((.((((.(((((.(((....)))...))))))))).)))))........)))))))))))(..(((....)))..). ( -42.89)
>consensus
CUGCCACAGCCUCUGGAUUUUUGGCUUCAACUUCAGCUUCGGU____UUUAGCUCUGGCUUUUGGCCGACUGCAGUUGCACAAUUUGCCGGCUGGGGGUUCCGUUUUUGGGGCA
...((.(((((...((....(((....(((((.(((..(((((.......(((....)))....)))))))).)))))..)))....))))))).))(..(((....)))..). (-33.58 = -33.98 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:38 2006