Locus 6864

Sequence ID 2L_DroMel_CAF1
Location 19,198,436 – 19,198,526
Length 90
Max. P 0.643050
window10943

overview

Window 3

Location 19,198,436 – 19,198,526
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 81.32
Mean single sequence MFE -30.44
Consensus MFE -19.70
Energy contribution -21.50
Covariance contribution 1.81
Combinations/Pair 1.18
Mean z-score -1.71
Structure conservation index 0.65
SVM decision value 0.23
SVM RNA-class probability 0.643050
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19198436 90 - 22407834
UGGAUGGUUCCCGCGGCCGAUGAUGACAUUCGUUUGGGCAUUGGCCUAGAAGUUGAUGCUGAUUUAGGGUCAUUACCGCGGGCCAACUCU
.((.(((..(((((((....(((((((.......(.(((((..((......))..))))).)......))))))))))))))))).)).. ( -35.42)
>DroPse_CAF1 23128 79 - 1
---------CCCGCGGCUGAUGAUGACAUUUGGUUGGGCAUUGGCCUAGAAGCUGAUGCUGAUUUAGGGCCGCCCUC--GGAAGGGCUGC
---------(((.((((..(((....)).)..))))(((((..((......))..)))))......)))..(((((.--...)))))... ( -28.60)
>DroEre_CAF1 18493 81 - 1
---------CCCGCGGCCGAUGAUGACAUUCGUUUGGGCAUUGGCCUAGAAGUUGAUGCUGAUUUAGGGUCAUUACCGCCGGCCAACUCU
---------.....(((((.(((((((.......(.(((((..((......))..))))).)......)))))))....)))))...... ( -28.42)
>DroYak_CAF1 19648 81 - 1
---------CCCGCGGCCGAUGAUGACAUUCGUUUGGGCAUUGGCCUAGAAGCUGAUGCUGAUUUAGGGUCAUUAGCGCAGGCCAACUCU
---------.....((((..(((((((.......(.(((((..((......))..))))).)......))))))).....))))...... ( -29.32)
>DroAna_CAF1 67833 78 - 1
---------CCCGCGGCUGAUGAUGACAUUCGCCUGGGCACUGGCCUAGAAGUUGAUGCUGAUUUAGGGUCAUUACCGCGGGCC---UUU
---------(((((((.(((((((..((((.((((((((....))))))..)).))))((......))))))))))))))))..---... ( -32.30)
>DroPer_CAF1 25930 79 - 1
---------CCCGCGGCUGAUGAUGACAUUUGGUUGGGCAUUGGCCUAGAAGCUGAUGCUGAUUUAGGGCCGCCCUC--GGAAGGGCUGU
---------(((.((((..(((....)).)..))))(((((..((......))..)))))......)))..(((((.--...)))))... ( -28.60)
>consensus
_________CCCGCGGCCGAUGAUGACAUUCGUUUGGGCAUUGGCCUAGAAGCUGAUGCUGAUUUAGGGUCAUUACCGCGGGCCAACUCU
.........(((((((....(((((((.......(.(((((..((......))..))))).)......))))))))))))))........ (-19.70 = -21.50 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:35 2006