Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,196,049 – 19,196,190 |
Length | 141 |
Max. P | 0.717610 |
Location | 19,196,049 – 19,196,164 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.10 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -22.26 |
Energy contribution | -24.82 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.72 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19196049 115 + 22407834 GCCCAG-AAACCCCACCCAUGGCCAAUCCUAAGCAGACCAUUUGCUUGUCCCUGUCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUG ((....-.....(((((...(((......((((((((...)))))))).....))).)))))...((((((((.....))))))))...))((((((......))))))....... ( -33.70) >DroSec_CAF1 15937 115 + 1 GCCCAG-AAACCCCACCCAUGGGCAAUCCUAAGCAGACCAUUUGCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUG (((((.-............))))).......(((((((((((.((........))..))))))))((((((((.....))))))))...)))(((((......)))))........ ( -39.92) >DroSim_CAF1 17133 115 + 1 GCCCAG-AAACCCCACCCAUGGCCAAUCCUAAGCAGACCAUUUGCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUG ((....-.....(((((...(((......((((((((...)))))))).....))).)))))...((((((((.....))))))))...))((((((......))))))....... ( -36.40) >DroEre_CAF1 16109 105 + 1 CCCCAA---ACCCCACCCAGGGCCAAUCCUAAGCAGCCCAUUUGCUUGUCCCUGUCU--------CGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUG ......---........(((((.((......(((((.....))))))).)))))...--------.(((((((.....)))))))......((((((......))))))....... ( -25.20) >DroYak_CAF1 17256 108 + 1 CCCCAAAAAACCCCACCCAUUGCCAAUCCUAAGCAGCCCAUUUGCUUGUCCCUGCCU--------CGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUG .....................((......(((((((.....))))))).........--------.(((((((.....)))))))....))((((((......))))))....... ( -20.40) >consensus GCCCAG_AAACCCCACCCAUGGCCAAUCCUAAGCAGACCAUUUGCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUG ............(((((...(((......(((((((.....))))))).....))).)))))...((((((((.....)))))))).....((((((......))))))....... (-22.26 = -24.82 + 2.56)
Location | 19,196,085 – 19,196,190 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.09 |
Mean single sequence MFE | -29.74 |
Consensus MFE | -23.46 |
Energy contribution | -24.34 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.67 |
Structure conservation index | 0.79 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19196085 105 + 22407834 CCAUUUGCUUGUCCCUGUCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUAUACAGA ...((((..((((..((((((((((((.((((((((.....)))))))).....((((((......))))))......)))..)))).)))))..))))..)))) ( -36.00) >DroSec_CAF1 15973 105 + 1 CCAUUUGCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUAUACAGA ...((((..((((..((.(((((((((.((((((((.....)))))))).....((((((......))))))......)))..)))).)).))..))))..)))) ( -31.00) >DroSim_CAF1 17169 105 + 1 CCAUUUGCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUAUACAGA ...((((..((((..((.(((((((((.((((((((.....)))))))).....((((((......))))))......)))..)))).)).))..))))..)))) ( -31.00) >DroEre_CAF1 16143 97 + 1 CCAUUUGCUUGUCCCUGUCU--------CGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGUGCCUAGACGGCGAUAUACAGA ...((((..((((.(((((.--------.(((((((.....)))))))......((((((......))))))......))))).(((.....)))))))..)))) ( -29.20) >DroYak_CAF1 17293 97 + 1 CCAUUUGCUUGUCCCUGCCU--------CGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUAUACAGA ......(((.(((...((..--------.(((((((.....)))))))....))((((((......))))))......))))))..................... ( -21.50) >consensus CCAUUUGCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUAUACAGA ...((((..((((..((.((((......((((((((.....))))))))..((((((((((.............)))))).)))).)))).))..))))..)))) (-23.46 = -24.34 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:34 2006