Locus 6862

Sequence ID 2L_DroMel_CAF1
Location 19,189,404 – 19,189,495
Length 91
Max. P 0.974938
window10939 window10940

overview

Window 9

Location 19,189,404 – 19,189,495
Length 91
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 75.97
Mean single sequence MFE -22.95
Consensus MFE -12.42
Energy contribution -12.20
Covariance contribution -0.22
Combinations/Pair 1.25
Mean z-score -1.87
Structure conservation index 0.54
SVM decision value 0.69
SVM RNA-class probability 0.824235
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19189404 91 + 22407834
UUU--G---------CCGGCGAACAAUGGCGAUUGUUGCCAACUCACGUUUGGCUAAUAAAAGCA-AGAGCAUUUGCCCC--CAAACGCAACAUAU-UUCGGCAAG
.((--(---------(((((.((((((....)))))))))......(((((((....((((.((.-...)).))))...)--))))))........-...))))). ( -27.20)
>DroPse_CAF1 13985 81 + 1
UUC-----------------------UGCAGAUUGUUGCCGAUUCACGCUCGGCUAAUAAAACCA-AGAGCAUUUGGCUAAAAAUACAAAACAUAU-UUUGGCAAG
(((-----------------------(.....((((((((((.......))))).))))).....-))))......(((((((............)-))))))... ( -15.20)
>DroEre_CAF1 9579 93 + 1
UUU--G---------CCGGCGAACAAUGGAGUUUGUUGCCAACUCACGUUUGGCUAAUAAAAGCA-AGAGCAUUUGCCCCGCCCAACAAAACAUAU-UUCGGCAAG
.((--(---------(((((.(((((......)))))))).......(((.(((...((((.((.-...)).))))....))).))).........-...))))). ( -24.70)
>DroYak_CAF1 10513 93 + 1
UUU--G---------CCGGCGAACAAUGGAGAUUGUUGCCAACUCACGUUUGGCUAAUAAAAGCA-AGAGCAUUUGCUCCGCCCAACAAAACAUAU-UUCGGCAAG
.((--(---------(((((.((((((....))))))))).......((((.(((......))).-.((((....)))).........))))....-...))))). ( -26.20)
>DroAna_CAF1 59799 106 + 1
UUUUGGCCGCCGCAUCCAGCACACAAUGAAAAUUGUUGCCAACUCACGUUUGGCUAAUAAAAGCAAAGAACAUUUGGCCGAAAAUACAAAACAUAUUUUCGGCAAG
..(((((....((.....))..(((((....))))).))))).....((((.(((......)))...)))).....((((((((((.......))))))))))... ( -29.20)
>DroPer_CAF1 16824 81 + 1
UUC-----------------------UGCAGAUUGUUGCCGAUUCACGCUCGGCUAAUAAAACCA-AGAGCAUUUGGCUAAAAAUACAAAACAUAU-UUUGGCAAG
(((-----------------------(.....((((((((((.......))))).))))).....-))))......(((((((............)-))))))... ( -15.20)
>consensus
UUU__G_________CCGGCGAACAAUGGAGAUUGUUGCCAACUCACGUUUGGCUAAUAAAAGCA_AGAGCAUUUGCCCCAAAAAACAAAACAUAU_UUCGGCAAG
...................................(((((.......((((.(((......)))...)))).((((..........))))..........))))). (-12.42 = -12.20 +  -0.22)

alignment

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secondary structure

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dotplot

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Window 0

Location 19,189,404 – 19,189,495
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -27.22
Consensus MFE -15.47
Energy contribution -15.05
Covariance contribution -0.42
Combinations/Pair 1.24
Mean z-score -2.32
Structure conservation index 0.57
SVM decision value 1.74
SVM RNA-class probability 0.974938
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19189404 91 - 22407834
CUUGCCGAA-AUAUGUUGCGUUUG--GGGGCAAAUGCUCU-UGCUUUUAUUAGCCAAACGUGAGUUGGCAACAAUCGCCAUUGUUCGCCGG---------C--AAA
.(((((...-.....(..((((((--(((((....)))))-.(((......)))))))))..)...(((((((((....)))))).)))))---------)--)). ( -32.80)
>DroPse_CAF1 13985 81 - 1
CUUGCCAAA-AUAUGUUUUGUAUUUUUAGCCAAAUGCUCU-UGGUUUUAUUAGCCGAGCGUGAAUCGGCAACAAUCUGCA-----------------------GAA
.((((.(((-((((.....)))))))..(((..((((((.-.((((.....)))))))))).....)))........)))-----------------------).. ( -19.00)
>DroEre_CAF1 9579 93 - 1
CUUGCCGAA-AUAUGUUUUGUUGGGCGGGGCAAAUGCUCU-UGCUUUUAUUAGCCAAACGUGAGUUGGCAACAAACUCCAUUGUUCGCCGG---------C--AAA
.(((((...-.(((((((.((((((((((((....)).))-)))).....)))).)))))))....((((((((......))))).)))))---------)--)). ( -30.20)
>DroYak_CAF1 10513 93 - 1
CUUGCCGAA-AUAUGUUUUGUUGGGCGGAGCAAAUGCUCU-UGCUUUUAUUAGCCAAACGUGAGUUGGCAACAAUCUCCAUUGUUCGCCGG---------C--AAA
.(((((...-.(((((((.((((((((((((....)))).-)))).....)))).)))))))....(((((((((....)))))).)))))---------)--)). ( -31.60)
>DroAna_CAF1 59799 106 - 1
CUUGCCGAAAAUAUGUUUUGUAUUUUCGGCCAAAUGUUCUUUGCUUUUAUUAGCCAAACGUGAGUUGGCAACAAUUUUCAUUGUGUGCUGGAUGCGGCGGCCAAAA
...(((((((((((.....)))))))))))...(((((....(((......)))..)))))...(((((.(((((....))))).(((((....)))))))))).. ( -30.70)
>DroPer_CAF1 16824 81 - 1
CUUGCCAAA-AUAUGUUUUGUAUUUUUAGCCAAAUGCUCU-UGGUUUUAUUAGCCGAGCGUGAAUCGGCAACAAUCUGCA-----------------------GAA
.((((.(((-((((.....)))))))..(((..((((((.-.((((.....)))))))))).....)))........)))-----------------------).. ( -19.00)
>consensus
CUUGCCGAA_AUAUGUUUUGUAUGUUGGGCCAAAUGCUCU_UGCUUUUAUUAGCCAAACGUGAGUUGGCAACAAUCUCCAUUGUUCGCCGG_________C__AAA
.(((((((...(((((((.((......(((((.........)))))......)).)))))))..)))))))................................... (-15.47 = -15.05 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:32 2006