Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,188,903 – 19,188,994 |
Length | 91 |
Max. P | 0.999859 |
Location | 19,188,903 – 19,188,994 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -36.22 |
Consensus MFE | -35.76 |
Energy contribution | -35.35 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.10 |
Mean z-score | -3.05 |
Structure conservation index | 0.99 |
SVM decision value | 4.28 |
SVM RNA-class probability | 0.999859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19188903 91 + 22407834 GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A---------------- (((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.---------------- ( -36.60) >DroSec_CAF1 8915 91 + 1 GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A---------------- (((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.---------------- ( -36.60) >DroSim_CAF1 10177 91 + 1 GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A---------------- (((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.---------------- ( -36.60) >DroEre_CAF1 9057 102 + 1 GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A-----GGGGUUUGGGC (((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.-----........... ( -36.60) >DroYak_CAF1 10008 99 + 1 GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGCUGCAAUGAGUGACCAA-----AGGGGU-----UUG--- (((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----......-----...--- ( -38.00) >DroAna_CAF1 59282 109 + 1 GGUGGUUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGGUUUUGCGGUUGCAACGAGUGACCAGUAACCAGG---AGGAUGCGCUC (((..(((((..(((((((((((((((.......((.(((.......))).))...))))))))))..)).)))..))..)))..))).(((.((...---.)).))).... ( -32.90) >consensus GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA_____A________________ (((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))........................ (-35.76 = -35.35 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:31 2006