Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,002,008 – 2,002,101 |
Length | 93 |
Max. P | 0.815325 |
Location | 2,002,008 – 2,002,101 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -23.12 |
Consensus MFE | -16.91 |
Energy contribution | -17.47 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.73 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2002008 93 + 22407834 GCUCAUAAAUGUUUAAUUCCUUAGUUGCCAACUGAAUGAAACUCCUCUCGUUU-----------GGCAGUCCUGCCGAAUCACAACUAAGAGGACAAGUAAACA .........((((((.(((((((((((......((((((........))))))-----------((((....))))......)))))))).)))....)))))) ( -22.60) >DroSec_CAF1 19604 93 + 1 GCUCAUAAAUGUUUAAUUCCUUAGUUGCCAACUGAAUGAAACUGCUCUCGUUA-----------GGCAGUCCUGCCGAAUCACAGCUAAGAGGACAAGUAAACA .........((((((.(((((((((((.......(((((........))))).-----------((((....))))......)))))))).)))....)))))) ( -21.70) >DroEre_CAF1 16548 101 + 1 GCUCAUAAAUGUUUAAUUCCUUAGUUACCAACUG---GAAACUGCACUCGUUUGCCCAGCAAUUGGCAGUCCUGCCGAAUCACAACUAAGAGGACAAGUAAACA .........((((((.((((((((((.....(((---(.....(((......)))))))...((((((....)))))).....))))))).)))....)))))) ( -23.70) >DroYak_CAF1 20968 100 + 1 GCUCAUAAAUGUUUAAUUCCUUAGUUAGCAACUG----AAACUUCACUCGUUUGCUCAGCAGUUGGCAGUGCUGCCGAAUCACAACUAAGAGGACAUGUAAACA .........((((((..(((((.((((((((.((----(........))).))))).)))..((((((....))))))...........)))))....)))))) ( -24.50) >consensus GCUCAUAAAUGUUUAAUUCCUUAGUUACCAACUG___GAAACUGCACUCGUUU___________GGCAGUCCUGCCGAAUCACAACUAAGAGGACAAGUAAACA .........((((((.(((((((((((...........((((.......))))...........((((....))))......)))))))).)))....)))))) (-16.91 = -17.47 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:53 2006