Locus 6857

Sequence ID 2L_DroMel_CAF1
Location 19,186,055 – 19,186,150
Length 95
Max. P 0.828660
window10931

overview

Window 1

Location 19,186,055 – 19,186,150
Length 95
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -27.22
Consensus MFE -18.32
Energy contribution -19.57
Covariance contribution 1.25
Combinations/Pair 1.11
Mean z-score -1.95
Structure conservation index 0.67
SVM decision value 0.71
SVM RNA-class probability 0.828660
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19186055 95 - 22407834
GUAUAACAGUCGUGUUGGAACCUCGAACUCGGUUGCAGUUCGAA--------------CAUCUCAUCGAACAUCUCCAAUUGGCUAAAUACCAAAACUGGCAUACUGUU
....((((((.((((..(((((........))))...((((((.--------------.......))))))........((((.......))))..)..)))))))))) ( -24.30)
>DroSec_CAF1 6050 107 - 1
GUAUAACAGUCGUGUUGGAAACUCGAACUCGGUUGCGGUUCGAUGUUGUACUUCCUUCAACCUCAUCGAACAU--CCAAUUGGCUAAAUACCAAAUGUGGCAUACUGUU
....((((((((.(((.(.....).))).))((..((((((((((..((..........))..))))))))..--....((((.......)))).))..))..)))))) ( -27.90)
>DroSim_CAF1 7309 107 - 1
GUAUAACAGUCGUGUUGGAAGCUCGAACUCGGUUGCGGUUCGAUGUUGCACUUCCUUCAACCUCAUCGAACAU--CCAAUUGGCUAAAUACCAAAACUGGCAUACUGUU
....((((((.((((..(..(((((....)))..)).((((((((..................))))))))..--....((((.......))))..)..)))))))))) ( -26.57)
>DroEre_CAF1 6280 104 - 1
GUAUAACAGUCGUGUUGGAACCUUAAGCUCGGUUGCAGUUCGAUGUUC--CGUCCAACAACCUCGUCGAACAU--CCAAUUGGCUU-AUACCAACACAAACAUUCGUUU
...........(((((((.....(((((.((((((..((((((((...--.((......))..))))))))..--.))))))))))-)..)))))))............ ( -30.10)
>consensus
GUAUAACAGUCGUGUUGGAACCUCGAACUCGGUUGCAGUUCGAUGUUG__CUUCCUUCAACCUCAUCGAACAU__CCAAUUGGCUAAAUACCAAAACUGGCAUACUGUU
....((((((.(((((((............((.....((((((((..................))))))))....))..((((.......))))..))))))))))))) (-18.32 = -19.57 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:25 2006